Plasmid NZ_CP086476.1

Sequence

Nucleotide Information

Accession	NZ_CP086476.1
Description	Escherichia coli strain Ec-050-T20-ESBL plasmid pEc-050-T20-ESBL_6, complete sequence
Source	refseq
Topology	circular
Length	33826 bp
GC Content	0.42 %
Created at NCBI	March 31, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_022759785.1
Assembly Coverage	390

Biosample

Curated Collection Information

Accession	22108725

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Switzerland
Original Query Type	name
Coordinates (Lat/Lon)	46.80/8.23
Address	Switzerland

ECOSYSTEM

Original Query	Homo sapiens,stool
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP145144.1	See Comparison
NZ_CP035754.1	See Comparison
NZ_OP242313.1	See Comparison
NZ_CP086486.1	See Comparison
OW969627.1	See Comparison
NZ_CP086496.1	See Comparison
NZ_CP086506.1	See Comparison
NZ_CP086516.1	See Comparison
CP083384.1	See Comparison
CP088731.1	See Comparison
NZ_CP126781.1	See Comparison
NZ_OR095747.1	See Comparison
NZ_CP029976.1	See Comparison
NZ_CP147037.1	See Comparison
NZ_CP110120.1	See Comparison
NZ_CP145144.1	See Comparison
NZ_OP242313.1	See Comparison
NZ_CP035754.1	See Comparison
NZ_CP086476.1	See Comparison
OW969627.1	See Comparison
NZ_CP086496.1	See Comparison
NZ_CP086486.1	See Comparison
NZ_CP029976.1	See Comparison
NZ_CP086506.1	See Comparison
NZ_CP086516.1	See Comparison
CP088731.1	See Comparison
CP083384.1	See Comparison
NZ_OR095747.1	See Comparison
NZ_CP126781.1	See Comparison
NZ_OP242313.1	See Comparison
NZ_CP110120.1	See Comparison
NZ_CP145144.1	See Comparison
NZ_CP035754.1	See Comparison
NZ_CP147037.1	See Comparison
NZ_CP110120.1	See Comparison
OW969627.1	See Comparison
NZ_CP086486.1	See Comparison
NZ_CP086496.1	See Comparison
NZ_CP086506.1	See Comparison
NZ_CP086516.1	See Comparison
NZ_CP126781.1	See Comparison
CP088731.1	See Comparison
CP083384.1	See Comparison
NZ_CP029976.1	See Comparison
NZ_OR095747.1	See Comparison
NZ_CP147037.1	See Comparison
NZ_CP035754.1	See Comparison
NZ_CP145144.1	See Comparison
CP088731.1	See Comparison
NZ_OP242313.1	See Comparison
OW969627.1	See Comparison
NZ_CP086486.1	See Comparison
NZ_CP086496.1	See Comparison
NZ_CP086506.1	See Comparison
NZ_CP086516.1	See Comparison
CP083384.1	See Comparison
NZ_CP126781.1	See Comparison
NZ_CP029976.1	See Comparison
OW969627.1	See Comparison
NZ_CP110120.1	See Comparison
NZ_CP147037.1	See Comparison
NZ_CP035754.1	See Comparison
NZ_OR095747.1	See Comparison
NZ_CP145144.1	See Comparison
NZ_OP242313.1	See Comparison
NZ_CP086496.1	See Comparison
NZ_CP086506.1	See Comparison
NZ_CP086486.1	See Comparison
NZ_CP086516.1	See Comparison
NZ_CP029976.1	See Comparison
CP088731.1	See Comparison
CP083384.1	See Comparison
NZ_CP147037.1	See Comparison
NZ_CP126781.1	See Comparison
NZ_OR095747.1	See Comparison
NZ_CP110120.1	See Comparison
NZ_CP086486.1	See Comparison
NZ_CP145144.1	See Comparison
NZ_CP035754.1	See Comparison
NZ_OP242313.1	See Comparison
OW969627.1	See Comparison
NZ_CP086496.1	See Comparison
NZ_CP086506.1	See Comparison
NZ_CP086516.1	See Comparison
CP088731.1	See Comparison
CP083384.1	See Comparison
NZ_CP029976.1	See Comparison
NZ_CP147037.1	See Comparison
NZ_CP126781.1	See Comparison
NZ_OR095747.1	See Comparison
NZ_CP110120.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore