Plasmid NZ_CP029975.1

Sequence

Nucleotide Information

Accession NZ_CP029975.1
Description Escherichia coli strain 51008369SK1 plasmid p51008369SK1_B, complete sequence
Source refseq
Topology circular
Length 113340 bp
GC Content 0.51 %
Created at NCBI June 22, 2018



Assembly

Genome Data Information

Accession GCF_003254065.1
Assembly Coverage 400


Biosample

Curated Collection Information
Accession 9381942

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.22N;8.33E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.22/8.33
Address 62, Galizzi, Beinwil (Freiamt), Bezirk Muri, Aargau, 5637, Switzerland

ECOSYSTEM
Original Query Dog,wound liquid
Classification host_associated,wound
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query wounded
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP086501.1 See Comparison
NZ_CP086511.1 See Comparison
NZ_CP086471.1 See Comparison
NZ_CP043947.1 See Comparison
NZ_CP086481.1 See Comparison
NZ_CP086491.1 See Comparison
NZ_CP043943.1 See Comparison
NZ_CP043228.1 See Comparison
NZ_CP043228.1 See Comparison
NZ_CP086511.1 See Comparison
NZ_CP086471.1 See Comparison
NZ_CP086481.1 See Comparison
NZ_CP086491.1 See Comparison
NZ_CP086501.1 See Comparison
NZ_CP043947.1 See Comparison
NZ_CP043947.1 See Comparison
NZ_CP043943.1 See Comparison
NZ_CP086471.1 See Comparison
NZ_CP086481.1 See Comparison
NZ_CP086491.1 See Comparison
NZ_CP086501.1 See Comparison
NZ_CP086511.1 See Comparison
NZ_CP043228.1 See Comparison
NZ_CP043943.1 See Comparison
NZ_CP086471.1 See Comparison
NZ_CP086481.1 See Comparison
NZ_CP086491.1 See Comparison
NZ_CP086501.1 See Comparison
NZ_CP086511.1 See Comparison
NZ_CP086471.1 See Comparison
NZ_CP043947.1 See Comparison
NZ_CP043943.1 See Comparison
NZ_CP043228.1 See Comparison
NZ_CP086481.1 See Comparison
NZ_CP086491.1 See Comparison
NZ_CP043228.1 See Comparison
NZ_CP086501.1 See Comparison
NZ_CP086511.1 See Comparison
NZ_CP043947.1 See Comparison
NZ_CP043943.1 See Comparison
NZ_CP029975.1 See Comparison
NZ_CP086471.1 See Comparison
NZ_CP086481.1 See Comparison
NZ_CP086491.1 See Comparison
NZ_CP086501.1 See Comparison
NZ_CP086511.1 See Comparison
NZ_CP086471.1 See Comparison
NZ_CP043947.1 See Comparison
NZ_CP043943.1 See Comparison
NZ_CP043228.1 See Comparison
NZ_CP086481.1 See Comparison
NZ_CP086491.1 See Comparison
NZ_CP086501.1 See Comparison
NZ_CP086511.1 See Comparison
NZ_CP043947.1 See Comparison
NZ_CP043943.1 See Comparison
NZ_CP043228.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusfloRcopy
amrfinderplusdfrA1copy
amrfinderplusblaTEM-30copy
rgisul1copy
rgiaadAcopy
amrfinderplussul2copy
amrfinderplusqacEdelta1copy
amrfinderplussul1copy
amrfinderplusaadA1copy
PGAGhistidine phosphatase family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 136 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_019097_00085MPF_I9771792plus99.6321002.28e-177548
mate-pair-formationNZ_CM001473_00069MPF_I76658009plus91.3791001.6799999999999995e-54189
mate-pair-formationNC_022267_00069MPF_I80098656plus98.611911.72e-142447
mate-pair-formationNC_019097_00075MPF_I87129692plus99.6941000655
mate-pair-formationNC_015965_00072MPF_I1098711688plus1001006.340000000000002e-154479
mate-pair-formationNC_023290_00086MPF_I1169112215plus99.4291003.4400000000000003e-100322
mate-pair-formationNC_019111_00038MPF_I1226912670plus97.0151003.53e-51180
mate-pair-formationNC_022267_00057MPF_I1742418623plus97.251000751
mate-pair-formationNC_019097_00056MPF_I2846430725plus98.6749201442
oriTHM021326MOBP3386133953plus1001004.37e-41172
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2