Plasmid NZ_CP104633.1

Sequence

Nucleotide Information

Accession NZ_CP104633.1
Description Escherichia coli strain AHM21C2872I plasmid pHNAH212872-3, complete sequence
Source refseq
Topology circular
Length 33795 bp
GC Content 0.42 %
Created at NCBI June 7, 2023



Assembly

Genome Data Information

Accession GCF_030169635.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 30667245

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query cell culture,In-house environment
Classification anthropogenic,cell_culture,construction
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW969627.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_CP029976.1 See Comparison
NZ_OP242313.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP104633.1 See Comparison
NZ_CP086547.1 See Comparison
OW969627.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_CP147037.1 See Comparison
OW969627.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP029976.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_OP242313.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP029976.1 See Comparison
NZ_CP029976.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_OP242313.1 See Comparison
OW969627.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_OP242313.1 See Comparison
OW969627.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_CP029976.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_OP242313.1 See Comparison
NZ_CP086535.1 See Comparison
OW969627.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP029976.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_OP242313.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP147037.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore