Plasmid NZ_CP028541.2
Sequence
Nucleotide Information
| Accession | NZ_CP028541.2 |
|---|---|
| Description | Klebsiella pneumoniae strain WCHKP2 plasmid pKPC2_020002, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 177516 bp |
| GC Content | 0.54 % |
| Created at NCBI | April 5, 2018 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 6909160 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Yibin,Sichuan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 28.80/104.73 |
| Address | China,Yibin,Sichuan |
ECOSYSTEM
| Original Query | Homo sapiens,Culture |
|---|---|
| Classification | cell_culture,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | merT | copy | ||
| amrfinderplus | merC | copy | ||
| amrfinderplus | blaKPC-2 | copy | ||
| amrfinderplus | blaKPC-2 | copy | ||
| amrfinderplus | blaKPC-2 | copy | ||
| amrfinderplus | blaCTX-M-65 | copy | ||
| rgi | rmtB | copy | ||
| amrfinderplus | catA2 | copy | ||
| amrfinderplus | fosA3 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 231 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | AP014804 | MOBP | 40241 | 40710 | plus | 88.494 | 85 | 4.93e-158 | 564 |
| mate-pair-formation | NC_022651_00077 | MPF_F | 42772 | 43080 | plus | 100 | 100 | 4.4e-63 | 213 |
| mate-pair-formation | NC_010409_00124 | MPF_F | 43658 | 44383 | plus | 98.76 | 100 | 4.2e-156 | 486 |
| mate-pair-formation | NC_019094_00090 | MPF_F | 44386 | 45780 | plus | 95.923 | 96 | 0 | 832 |
| mate-pair-formation | NC_017639_00094 | MPF_F | 46837 | 47349 | plus | 96.491 | 100 | 1.72e-97 | 314 |
| mate-pair-formation | NC_013437_00116 | MPF_T | 47868 | 50489 | plus | 90.503 | 99 | 0 | 1640 |
| mate-pair-formation | NC_007675_00027 | MPF_F | 50875 | 51504 | plus | 99.048 | 97 | 2.8999999999999996e-135 | 425 |
| mate-pair-formation | NC_017639_00100 | MPF_F | 51504 | 52460 | plus | 98.746 | 100 | 0 | 605 |
| mate-pair-formation | NC_019037_00027 | MPF_F | 53442 | 54077 | plus | 92.925 | 100 | 5.37e-130 | 409 |
| mate-pair-formation | NC_019094_00068 | MPF_F | 54893 | 56740 | plus | 96.753 | 100 | 0 | 1157 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 18 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |