Plasmid NZ_CP107409.1

Sequence

Nucleotide Information

Accession NZ_CP107409.1
Description Klebsiella pneumoniae strain CRKP_24 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 157273 bp
GC Content 0.54 %
Created at NCBI Feb. 2, 2023



Assembly

Genome Data Information

Accession GCF_028221125.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 31207053

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Wuhan
Original Query Type name
Coordinates (Lat/Lon) 30.59/114.30
Address China,Wuhan

ECOSYSTEM
Original Query Homo sapiens,lavage fluid
Classification bronchi,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MT269833.1 See Comparison
NZ_MT269825.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP141802.1 See Comparison
NZ_CP139371.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP107368.1 See Comparison
NZ_CP107309.1 See Comparison
NZ_CP107409.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_MT269825.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_CP107309.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP141802.1 See Comparison
NZ_CP139371.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP107368.1 See Comparison
NZ_CP139371.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269825.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP141802.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_CP107309.1 See Comparison
NZ_CP107368.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_MT269825.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP028541.2 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP141802.1 See Comparison
NZ_CP139371.1 See Comparison
NZ_CP107309.1 See Comparison
NZ_CP107368.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269825.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_CP139371.1 See Comparison
NZ_CP139371.1 See Comparison
NZ_CP107309.1 See Comparison
NZ_CP107368.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269825.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP141802.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP141802.1 See Comparison
NZ_CP107309.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP107368.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore