Plasmid NZ_CP025952.1

Sequence

Nucleotide Information

Accession	NZ_CP025952.1
Description	Klebsiella pneumoniae subsp. pneumoniae strain GD4 plasmid pKPGD4, complete sequence
Source	refseq
Topology	circular
Length	170821 bp
GC Content	0.53 %
Created at NCBI	Jan. 24, 2018

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (72407)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_002893825.1
Assembly Coverage	30

Biosample

Curated Collection Information

Accession	8166690

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China
Original Query Type	name
Coordinates (Lat/Lon)	34.41/86.03
Address	China

ECOSYSTEM

Original Query	Homo sapiens
Classification	host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

NZ_CP142389.1	See Comparison
NZ_MK036888.1	See Comparison
NZ_MF168405.1	See Comparison
NZ_MF168403.1	See Comparison
NZ_MF133495.1	See Comparison
NZ_CP039820.1	See Comparison
CP030319.1	See Comparison
NZ_CP053017.1	See Comparison
NZ_CP064248.1	See Comparison
NZ_CP064253.1	See Comparison
NZ_CP061347.1	See Comparison
NZ_MN842295.1	See Comparison
NZ_CP090219.1	See Comparison
NZ_OM144977.1	See Comparison
NZ_CP087647.1	See Comparison
NZ_CP066897.1	See Comparison
NZ_CP087608.1	See Comparison
NZ_CP036372.1	See Comparison
NZ_CP081821.1	See Comparison
NZ_CP040835.1	See Comparison
NZ_MT269842.1	See Comparison
NZ_MT269841.1	See Comparison
NZ_MT269833.1	See Comparison
NZ_MT269819.1	See Comparison
NZ_MT269843.1	See Comparison
NZ_MT269832.1	See Comparison
NZ_MT269822.1	See Comparison
NZ_MT269840.1	See Comparison
NZ_MT269835.1	See Comparison
NZ_MK036888.1	See Comparison
NZ_CP028541.2	See Comparison
NZ_OQ821203.1	See Comparison
NZ_CP142389.1	See Comparison
NZ_MF168405.1	See Comparison
NZ_MF168403.1	See Comparison
NZ_MF133495.1	See Comparison
NZ_CP039820.1	See Comparison
CP030319.1	See Comparison
NZ_CP064248.1	See Comparison
NZ_CP053017.1	See Comparison
NZ_CP064253.1	See Comparison
NZ_CP061347.1	See Comparison
NZ_MN842295.1	See Comparison
NZ_OM144977.1	See Comparison
NZ_CP090219.1	See Comparison
NZ_CP066897.1	See Comparison
NZ_CP087647.1	See Comparison
NZ_CP087608.1	See Comparison
NZ_CP081821.1	See Comparison
NZ_MT269842.1	See Comparison
NZ_CP040835.1	See Comparison
NZ_MT269841.1	See Comparison
NZ_MT269833.1	See Comparison
NZ_MT269819.1	See Comparison
NZ_MT269843.1	See Comparison
NZ_MT269832.1	See Comparison
NZ_MT269822.1	See Comparison
NZ_MT269840.1	See Comparison
NZ_MT269835.1	See Comparison
NZ_CP036372.1	See Comparison
NZ_CP028541.2	See Comparison
NZ_OQ821203.1	See Comparison
NZ_MF168405.1	See Comparison
NZ_CP142389.1	See Comparison
NZ_MK036888.1	See Comparison
NZ_CP061347.1	See Comparison
NZ_CP039820.1	See Comparison
CP030319.1	See Comparison
NZ_CP053017.1	See Comparison
NZ_CP064248.1	See Comparison
NZ_CP064253.1	See Comparison
NZ_MF168403.1	See Comparison
NZ_MF133495.1	See Comparison
NZ_OM144977.1	See Comparison
NZ_MN842295.1	See Comparison
NZ_CP090219.1	See Comparison
NZ_CP066897.1	See Comparison
NZ_CP142389.1	See Comparison
NZ_OQ821203.1	See Comparison
NZ_CP087647.1	See Comparison
NZ_CP087608.1	See Comparison
NZ_CP081821.1	See Comparison
NZ_CP040835.1	See Comparison
NZ_MT269842.1	See Comparison
NZ_MT269841.1	See Comparison
NZ_MT269833.1	See Comparison
NZ_MT269819.1	See Comparison
NZ_MT269843.1	See Comparison
NZ_MT269832.1	See Comparison
NZ_MT269822.1	See Comparison
NZ_MT269840.1	See Comparison
NZ_MT269835.1	See Comparison
NZ_CP036372.1	See Comparison
NZ_CP028541.2	See Comparison
NZ_CP064248.1	See Comparison
NZ_MF168403.1	See Comparison
NZ_MF133495.1	See Comparison
NZ_CP039820.1	See Comparison
NZ_CP064253.1	See Comparison
NZ_MK036888.1	See Comparison
NZ_MF168405.1	See Comparison
CP030319.1	See Comparison
NZ_CP053017.1	See Comparison
NZ_OM144977.1	See Comparison
NZ_CP061347.1	See Comparison
NZ_MN842295.1	See Comparison
NZ_CP090219.1	See Comparison
NZ_CP036372.1	See Comparison
NZ_CP066897.1	See Comparison
NZ_CP040835.1	See Comparison
NZ_MT269842.1	See Comparison
NZ_MT269841.1	See Comparison
NZ_MT269833.1	See Comparison
NZ_MT269819.1	See Comparison
NZ_MT269843.1	See Comparison
NZ_MT269832.1	See Comparison
NZ_MT269822.1	See Comparison
NZ_MT269840.1	See Comparison
NZ_MT269835.1	See Comparison
NZ_CP087647.1	See Comparison
NZ_CP087608.1	See Comparison
NZ_CP081821.1	See Comparison
NZ_CP028541.2	See Comparison
NZ_OQ821203.1	See Comparison
NZ_CP039820.1	See Comparison
NZ_CP142389.1	See Comparison
NZ_MK036888.1	See Comparison
NZ_MF168405.1	See Comparison
NZ_MF168403.1	See Comparison
NZ_MF133495.1	See Comparison
CP030319.1	See Comparison
NZ_CP053017.1	See Comparison
NZ_CP081821.1	See Comparison
NZ_CP064248.1	See Comparison
NZ_CP064253.1	See Comparison
NZ_CP061347.1	See Comparison
NZ_MN842295.1	See Comparison
NZ_OM144977.1	See Comparison
NZ_CP066897.1	See Comparison
NZ_CP087647.1	See Comparison
NZ_CP087608.1	See Comparison
NZ_CP090219.1	See Comparison
NZ_CP040835.1	See Comparison
NZ_CP036372.1	See Comparison
NZ_MT269842.1	See Comparison
NZ_MT269841.1	See Comparison
NZ_MT269833.1	See Comparison
NZ_MT269819.1	See Comparison
NZ_MT269843.1	See Comparison
NZ_MT269832.1	See Comparison
NZ_MT269822.1	See Comparison
NZ_MT269840.1	See Comparison
NZ_MT269835.1	See Comparison
NZ_OQ821203.1	See Comparison
NZ_CP028541.2	See Comparison
NZ_CP025952.1	See Comparison
NZ_CP142389.1	See Comparison
NZ_MK036888.1	See Comparison
NZ_MF168405.1	See Comparison
NZ_MF168403.1	See Comparison
NZ_MF133495.1	See Comparison
NZ_CP053017.1	See Comparison
NZ_CP039820.1	See Comparison
CP030319.1	See Comparison
NZ_CP087608.1	See Comparison
NZ_CP090219.1	See Comparison
NZ_OM144977.1	See Comparison
NZ_CP064248.1	See Comparison
NZ_CP064253.1	See Comparison
NZ_CP061347.1	See Comparison
NZ_MN842295.1	See Comparison
NZ_CP066897.1	See Comparison
NZ_CP087647.1	See Comparison
NZ_CP081821.1	See Comparison
NZ_CP040835.1	See Comparison
NZ_MT269842.1	See Comparison
NZ_MT269841.1	See Comparison
NZ_MT269833.1	See Comparison
NZ_MT269819.1	See Comparison
NZ_MT269843.1	See Comparison
NZ_MT269832.1	See Comparison
NZ_MT269822.1	See Comparison
NZ_MT269840.1	See Comparison
NZ_MT269835.1	See Comparison
NZ_CP036372.1	See Comparison
NZ_CP028541.2	See Comparison
NZ_OQ821203.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore