Plasmid NZ_CP023942.1

Sequence

Nucleotide Information

Accession NZ_CP023942.1
Description Klebsiella pneumoniae strain FDAARGOS_444 plasmid unnamed2
Source refseq
Topology linear
Length 187926 bp
GC Content 0.53 %
Created at NCBI Oct. 20, 2017



Assembly

Genome Data Information

Accession GCF_002587165.1
Assembly Coverage 15.18


Biosample

Curated Collection Information
Accession 7312488

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Canada,BC
Original Query Type name
Coordinates (Lat/Lon) 55.00/-125.00
Address Canada,BC

ECOSYSTEM
Original Query Homo sapiens,wound
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OM144977.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_OQ821203.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP142389.1 See Comparison
NZ_CP039820.1 See Comparison
CP030319.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_CP142389.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP039820.1 See Comparison
CP030319.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_CP039820.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP142389.1 See Comparison
CP030319.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP023942.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_OM144977.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_CP039820.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP142389.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF133495.1 See Comparison
CP030319.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP142389.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_CP039820.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP064253.1 See Comparison
CP030319.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP142389.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_CP039820.1 See Comparison
CP030319.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP090219.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore