Plasmid CP030319.1

Sequence

Nucleotide Information

Accession CP030319.1
Description Klebsiella pneumoniae strain 11021 plasmid p11021-2, complete sequence
Source insd
Topology circular
Length 169824 bp
GC Content 0.53 %
Created at NCBI Jan. 27, 2020



Biosample

Curated Collection Information
Accession 9499692

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.57N;106.55E
Original Query Type coordinates
Coordinates (Lat/Lon) 29.57/106.55
Address 嘉陵江滨江路, 大溪沟街道, Yuzhong District, Chongqing, 400014, China

ECOSYSTEM
Original Query Homo sapiens,Physical
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Urinary System Infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP142389.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF168405.1 See Comparison
NZ_MF168403.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_CP039820.1 See Comparison
CP030319.1 See Comparison
NZ_CP053017.1 See Comparison
NZ_MN842295.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_CP040835.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_MT269840.1 See Comparison
NZ_MT269835.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269841.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269819.1 See Comparison
NZ_CP025952.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_MF168405.1 See Comparison
NZ_CP023942.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP142389.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF168403.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP039820.1 See Comparison
NZ_CP053017.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_MN842295.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP040835.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269841.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269819.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_MT269840.1 See Comparison
NZ_MT269835.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_CP025952.1 See Comparison
NZ_CP039820.1 See Comparison
NZ_MF168405.1 See Comparison
NZ_CP023942.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP142389.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF168403.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP053017.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_MN842295.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_CP040835.1 See Comparison
NZ_MT269841.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269819.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_MT269840.1 See Comparison
NZ_MT269835.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP025952.1 See Comparison
NZ_CP023942.1 See Comparison
NZ_MF168405.1 See Comparison
NZ_CP142389.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF168403.1 See Comparison
NZ_CP039820.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_CP053017.1 See Comparison
NZ_MN842295.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP040835.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269841.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269819.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_MT269840.1 See Comparison
NZ_MT269835.1 See Comparison
NZ_CP025952.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP023942.1 See Comparison
NZ_CP142389.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_MF168403.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_MF168405.1 See Comparison
NZ_CP081821.1 See Comparison
NZ_CP039820.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_CP053017.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_MN842295.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_CP040835.1 See Comparison
NZ_MT269841.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269819.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_MT269840.1 See Comparison
NZ_MT269835.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP036372.1 See Comparison
NZ_CP025952.1 See Comparison
NZ_OQ821203.1 See Comparison
NZ_CP142389.1 See Comparison
NZ_MK036888.1 See Comparison
NZ_CP023942.1 See Comparison
NZ_MF168403.1 See Comparison
NZ_MF168405.1 See Comparison
NZ_MF133495.1 See Comparison
NZ_CP039820.1 See Comparison
NZ_CP064248.1 See Comparison
NZ_CP053017.1 See Comparison
NZ_CP064253.1 See Comparison
NZ_CP087647.1 See Comparison
NZ_CP061347.1 See Comparison
NZ_MN842295.1 See Comparison
NZ_CP090219.1 See Comparison
NZ_OM144977.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP087608.1 See Comparison
NZ_CP040835.1 See Comparison
NZ_MT269842.1 See Comparison
NZ_MT269841.1 See Comparison
NZ_MT269833.1 See Comparison
NZ_MT269819.1 See Comparison
NZ_MT269843.1 See Comparison
NZ_MT269832.1 See Comparison
NZ_MT269822.1 See Comparison
NZ_MT269840.1 See Comparison
NZ_MT269835.1 See Comparison
NZ_CP028541.2 See Comparison
NZ_CP081821.1 See Comparison
NZ_CP036372.1 See Comparison
NZ_CP025952.1 See Comparison
NZ_CP023942.1 See Comparison
NZ_OQ821203.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore