Plasmid NZ_CP027158.1
Sequence
Nucleotide Information
Accession | NZ_CP027158.1 |
---|---|
Description | Klebsiella pneumoniae strain AR_0361 plasmid unnamed2, complete sequence |
Source | refseq |
Topology | circular |
Length | 113639 bp |
GC Content | 0.54 % |
Created at NCBI | March 12, 2018 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Klebsiella pneumoniae (573) |
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Lineage
Superkingdom | Bacteria (2) |
---|---|
Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Klebsiella (570) |
Species | Klebsiella_pneumoniae (573) |
Strain |
Biosample
Curated Collection Information
Accession | 7291504 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | None |
---|---|
Original Query Type | None |
Coordinates (Lat/Lon) | |
Address | None |
ECOSYSTEM
Original Query | None |
---|---|
Classification | None |
Host-associated Taxon |
DISEASE
Original Query | None |
---|---|
DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
amrfinderplus | blaKPC-2 | copy | ||
amrfinderplus | blaTEM-1 | copy | ||
rgi | OXA-9 | copy | ||
rgi | OXA-9 | copy | ||
amrfinderplus | merC | copy | ||
PGAG | umuD | copy | ||
PGAG | Y-family DNA polymerase | copy | ||
PGAG | RepB family plasmid replication initiator protein | copy | ||
PGAG | AAA family ATPase | copy | ||
PGAG | ParB family protein | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 143 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
relaxase | NC_021231_00058 | MOBF | 57655 | 62913 | minus | 97.091 | 100 | 0 | 3333 |
relaxase | CP035180_00077 | MOBF | 62925 | 63680 | minus | 91.27 | 98 | 0 | 366 |
mate-pair-formation | NC_021502_00150 | MPF_T | 62916 | 65225 | minus | 97.013 | 100 | 0 | 1419 |
mate-pair-formation | NC_023905_00125 | MPF_F | 67714 | 70560 | minus | 99.684 | 100 | 0 | 1769 |
mate-pair-formation | NC_019165_00034 | MPF_F | 70563 | 71918 | minus | 98.23 | 99 | 0 | 820 |
mate-pair-formation | NC_021654_00016 | MPF_F | 74812 | 76773 | minus | 98.471 | 98 | 0 | 1240 |
mate-pair-formation | NC_019389_00080 | MPF_F | 76826 | 77461 | minus | 96.698 | 100 | 2.81e-135 | 425 |
mate-pair-formation | NC_022609_00081 | MPF_F | 77477 | 78403 | minus | 96.117 | 94 | 0 | 607 |
mate-pair-formation | NC_014312_00128 | MPF_F | 78900 | 79517 | minus | 97.573 | 98 | 1.46e-119 | 380 |
mate-pair-formation | NC_021502_00131 | MPF_T | 79909 | 82545 | minus | 97.042 | 100 | 0 | 1761 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries