Plasmid NC_023904.1
Sequence
Nucleotide Information
| Accession | NC_023904.1 |
|---|---|
| Description | Klebsiella pneumoniae plasmid pGR-1780, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 113622 bp |
| GC Content | 0.54 % |
| Created at NCBI | April 10, 2014 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14226738 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | merC | copy | ||
| amrfinderplus | blaKPC-2 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| rgi | OXA-9 | copy | ||
| rgi | OXA-9 | copy | ||
| PGAG | PIN domain-containing protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | DUF2726 domain-containing protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | phospholipase D family protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 145 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000129__CP018340 | IncFII | 3573 | 3807 | minus | 99.574 | 100 | 7.44e-118 | 429 |
| replicon | CP033468_00001 | rep_cluster_2183 | 3842 | 4669 | plus | 82.289 | 96 | 0 | 715 |
| replicon | 000097__NC_025166_00051 | IncFIB | 53161 | 54057 | minus | 100 | 100 | 0 | 1657 |
| relaxase | CP035180_00077 | MOBF | 106123 | 106878 | plus | 91.27 | 98 | 0 | 366 |
| relaxase | NC_021231_00058 | MOBF | 106890 | 112148 | plus | 97.091 | 100 | 0 | 3333 |
| mate-pair-formation | NC_014312_00116 | MPF_F | 80959 | 81261 | plus | 100 | 100 | 4.22e-61 | 207 |
| mate-pair-formation | NC_014312_00118 | MPF_F | 81837 | 82574 | plus | 99.593 | 100 | 1.2499999999999998e-159 | 496 |
| mate-pair-formation | NC_023332_00154 | MPF_F | 82577 | 83998 | plus | 99.578 | 100 | 0 | 793 |
| mate-pair-formation | NC_019389_00068 | MPF_F | 84181 | 84696 | plus | 98.837 | 89 | 2.02e-109 | 350 |
| mate-pair-formation | NC_021502_00131 | MPF_T | 87258 | 89894 | plus | 97.042 | 100 | 0 | 1761 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |