Plasmid CP067901.1
Sequence
Nucleotide Information
| Accession | CP067901.1 |
|---|---|
| Description | Klebsiella pneumoniae strain ARLG-3197 plasmid pC251_2, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 110267 bp |
| GC Content | 0.54 % |
| Created at NCBI | March 2, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 15868969 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA,South |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 33.31/-118.34 |
| Address | USA,South |
ECOSYSTEM
| Original Query | Homo sapiens,urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | merC | copy | ||
| rgi | OXA-9 | copy | ||
| rgi | OXA-9 | copy | ||
| amrfinderplus | blaKPC-2 | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | AAA family ATPase | copy | ||
| PGAG | ParB/RepB/Spo0J family partition protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 139 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_021502_00150 | MPF_T | 60811 | 63120 | minus | 97.013 | 100 | 0 | 1419 |
| mate-pair-formation | NC_023905_00125 | MPF_F | 65609 | 68455 | minus | 99.684 | 100 | 0 | 1769 |
| mate-pair-formation | NC_019165_00034 | MPF_F | 68458 | 69813 | minus | 98.23 | 99 | 0 | 820 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 72707 | 74668 | minus | 98.471 | 98 | 0 | 1240 |
| mate-pair-formation | NC_019389_00080 | MPF_F | 74721 | 75356 | minus | 96.698 | 100 | 2.81e-135 | 425 |
| mate-pair-formation | NC_022609_00081 | MPF_F | 75372 | 76358 | minus | 92.121 | 100 | 0 | 615 |
| mate-pair-formation | NC_014312_00128 | MPF_F | 76794 | 77426 | minus | 98.104 | 100 | 2.37e-124 | 393 |
| mate-pair-formation | NC_021502_00131 | MPF_T | 77818 | 80454 | minus | 97.042 | 100 | 0 | 1761 |
| mate-pair-formation | NC_019389_00068 | MPF_F | 83016 | 83531 | minus | 98.837 | 89 | 2.02e-109 | 350 |
| mate-pair-formation | NC_023332_00154 | MPF_F | 83714 | 85135 | minus | 99.578 | 100 | 0 | 793 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |