Plasmid NZ_CP110959.1
Sequence
Nucleotide Information
| Accession | NZ_CP110959.1 |
|---|---|
| Description | Klebsiella pneumoniae subsp. pneumoniae strain LC-395/19 plasmid pIT-395-FIIK2_CZA, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 134385 bp |
| GC Content | 0.54 % |
| Created at NCBI | Nov. 23, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (72407) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 29934022 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 45.852176N;9.414998E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 45.85/9.41 |
| Address | Ospedale Alessandro Manzoni, 9;11, Via dell'Eremo, Belledo, Lecco, Lombardy, 23900, Italy |
ECOSYSTEM
| Original Query | Homo sapiens,urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| rgi | OXA-9 | copy | ||
| rgi | OXA-9 | copy | ||
| rgi | OXA-9 | copy | ||
| rgi | OXA-9 | copy | ||
| amrfinderplus | blaKPC-3 | copy | ||
| amrfinderplus | merC | copy | ||
| amrfinderplus | blaKPC-3 | copy | ||
| PGAG | RepB family plasmid replication initiator protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 162 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_021231_00058 | MOBF | 76296 | 81554 | minus | 97.034 | 100 | 0 | 3331 |
| relaxase | CP035180_00077 | MOBF | 81566 | 82321 | minus | 92.46 | 98 | 0 | 372 |
| replicon | 000097__NC_025166_00051 | IncFIB | 1 | 897 | plus | 100 | 100 | 0 | 1657 |
| replicon | 000129__CP018340 | IncFII | 48151 | 48385 | minus | 99.574 | 100 | 7.44e-118 | 429 |
| replicon | CP033468_00001 | rep_cluster_2183 | 48420 | 49247 | plus | 82.289 | 96 | 0 | 715 |
| mate-pair-formation | NC_021502_00150 | MPF_T | 81557 | 83866 | minus | 96.623 | 100 | 0 | 1413 |
| mate-pair-formation | NC_023905_00125 | MPF_F | 86355 | 89201 | minus | 99.684 | 100 | 0 | 1769 |
| mate-pair-formation | NC_019165_00034 | MPF_F | 89204 | 90559 | minus | 98.23 | 99 | 0 | 820 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 93453 | 95414 | minus | 98.471 | 98 | 0 | 1240 |
| mate-pair-formation | NC_019389_00080 | MPF_F | 95467 | 96102 | minus | 96.698 | 100 | 2.81e-135 | 425 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |