Plasmid NZ_CP023187.1

Sequence

Nucleotide Information

Accession NZ_CP023187.1
Description Klebsiella michiganensis strain K518 plasmid pK518_NDM1, complete sequence
Source refseq
Topology circular
Length 106579 bp
GC Content 0.56 %
Created at NCBI Sept. 14, 2017



Assembly

Genome Data Information

Accession GCF_002290285.1
Assembly Coverage 200


Biosample

Curated Collection Information

Accession 7551913

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.26N;120.19E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.26/120.19
Address Qingchun Road (East), 采荷, Caihe, Shangcheng District, Hangzhou City, Zhejiang, 310016, China

ECOSYSTEM
Original Query patient,China: The First Affiliated Hospital of Zhejiang University
Classification host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query acute leukemia, pneumonia
DOID/SYMP
  • Leukemia (DOID:1240 )
  • A cancer that affects the blood or bone marrow characterized by an abnormal proliferation of blood cells.
  • Pneumonia (DOID:552 )
  • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OL828744.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_CP030305.1 See Comparison
NC_021501.1 See Comparison
NC_025184.1 See Comparison
NZ_CP040598.1 See Comparison
NZ_CP022350.1 See Comparison
NZ_CP023914.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_CP137480.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP149992.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KR351290.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_OL828744.1 See Comparison
NC_021501.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_CP030305.1 See Comparison
NC_025184.1 See Comparison
NZ_CP040598.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP023914.1 See Comparison
NZ_CP022350.1 See Comparison
NZ_CP137480.1 See Comparison
NZ_CP030305.1 See Comparison
NZ_CP149992.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_KR351290.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP126852.1 See Comparison
NC_025184.1 See Comparison
NZ_CP040598.1 See Comparison
NZ_CP022350.1 See Comparison
NC_021501.1 See Comparison
NZ_CP023914.1 See Comparison
NZ_CP023187.1 See Comparison
NZ_CP137480.1 See Comparison
NZ_CP149992.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_KR351290.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP040598.1 See Comparison
NZ_CP030305.1 See Comparison
NC_021501.1 See Comparison
NZ_CP082170.1 See Comparison
NC_025184.1 See Comparison
NZ_CP022350.1 See Comparison
NZ_CP023914.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_CP137480.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP149992.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KR351290.1 See Comparison
NZ_CP040598.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP082170.1 See Comparison
NC_025184.1 See Comparison
NZ_CP030305.1 See Comparison
NC_021501.1 See Comparison
NZ_CP022350.1 See Comparison
NZ_CP023914.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_CP137480.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP149992.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KR351290.1 See Comparison
NZ_CP023914.1 See Comparison
NC_021501.1 See Comparison
NZ_CP040598.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_CP030305.1 See Comparison
NC_025184.1 See Comparison
NZ_CP137480.1 See Comparison
NZ_CP022350.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KR351290.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP149992.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_KC887916.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore