Plasmid NZ_CP018738.1

Sequence

Nucleotide Information

Accession NZ_CP018738.1
Description Klebsiella pneumoniae strain Kp_Goe_121641 plasmid pKp_Goe_641-3
Source refseq
Topology linear
Length 5259 bp
GC Content 0.52 %
Created at NCBI Dec. 22, 2016



Assembly

Genome Data Information

Accession GCF_001913175.1
Assembly Coverage 308


Biosample

Curated Collection Information
Accession 5412452

PLASMID INFORMATION
Genotype MLST ST101

GEOGRAPHICAL INFORMATION
Original Query 51.53919016N;9.91156249E
Original Query Type coordinates
Coordinates (Lat/Lon) 51.54/9.91
Address Königsstieg, Egelsberg, Weststadt, Göttingen, Landkreis Göttingen, Lower Saxony, 37081, Germany

ECOSYSTEM
Original Query Homo sapiens,urine sample
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 32
Host-associated Sex male

DISEASE
Original Query Urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore