Plasmid NZ_CP015835.1

Sequence

Nucleotide Information

Accession NZ_CP015835.1
Description Escherichia coli strain MS6198 plasmid pMS6198A, complete sequence
Source refseq
Topology circular
Length 137565 bp
GC Content 0.52 %
Created at NCBI Sept. 9, 2016



Assembly

Genome Data Information

Accession GCF_001721525.1
Assembly Coverage 120


Biosample

Curated Collection Information
Accession 4939501

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP096329.1 See Comparison
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NZ_CP137231.1 See Comparison
NZ_OR041626.1 See Comparison
NC_019158.1 See Comparison
NZ_CP040884.1 See Comparison
NZ_CP132611.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_CP142096.1 See Comparison
NZ_MK123268.1 See Comparison
PP622803.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_MH995508.1 See Comparison
NZ_KJ588779.1 See Comparison
NZ_KU726616.1 See Comparison
NZ_KX786648.1 See Comparison
NZ_OL389795.1 See Comparison
NZ_MN310375.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_CP087274.1 See Comparison
NZ_MN603981.1 See Comparison
NZ_CP117223.1 See Comparison
NZ_MZ546616.1 See Comparison
NZ_OK500123.1 See Comparison
NZ_MZ606384.2 See Comparison
NZ_CP090205.1 See Comparison
NZ_CP006661.1 See Comparison
NZ_CP020056.1 See Comparison
NZ_MZ606383.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_CP018817.1 See Comparison
NZ_CP096368.1 See Comparison
NC_019158.1 See Comparison
NZ_CP040884.1 See Comparison
NZ_CP022126.1 See Comparison
NZ_CP137204.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
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NZ_CP137231.1 See Comparison
NZ_CP142096.1 See Comparison
NZ_CP132611.1 See Comparison
PP622803.1 See Comparison
NZ_OR041626.1 See Comparison
NZ_OQ750828.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_MK123268.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_MH995508.1 See Comparison
NZ_CP117223.1 See Comparison
NZ_KU726616.1 See Comparison
NZ_MN603981.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_KX786648.1 See Comparison
NZ_KJ588779.1 See Comparison
NZ_MN310375.1 See Comparison
NZ_MZ606384.2 See Comparison
NZ_MZ546616.1 See Comparison
NZ_OK500123.1 See Comparison
NZ_CP018817.1 See Comparison
NZ_CP087274.1 See Comparison
NZ_MZ606383.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_CP020056.1 See Comparison
NZ_OL389795.1 See Comparison
NZ_CP090205.1 See Comparison
NC_019158.1 See Comparison
NZ_CP015835.1 See Comparison
NZ_CP006661.1 See Comparison
NZ_CP022126.1 See Comparison
NZ_CP040884.1 See Comparison
NZ_CP137204.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_CP096368.1 See Comparison
NZ_OR041626.1 See Comparison
NZ_CP132611.1 See Comparison
PP622803.1 See Comparison
NZ_OQ750828.1 See Comparison
NZ_MK123268.1 See Comparison
NZ_CP142096.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_KJ588779.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_KX786648.1 See Comparison
NZ_KU726616.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_MH995508.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_MN310375.1 See Comparison
NZ_MN603981.1 See Comparison
NZ_CP117223.1 See Comparison
NZ_CP006661.1 See Comparison
NZ_MZ606384.2 See Comparison
NZ_CP090205.1 See Comparison
NZ_CP020056.1 See Comparison
NZ_MZ546616.1 See Comparison
NZ_OK500123.1 See Comparison
NZ_CP087274.1 See Comparison
NZ_OL389795.1 See Comparison
NZ_MZ606383.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_CP018817.1 See Comparison
NZ_CP096368.1 See Comparison
NC_019158.1 See Comparison
NZ_CP040884.1 See Comparison
NZ_CP022126.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP137204.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_OQ750828.1 See Comparison
NZ_CP132611.1 See Comparison
NZ_OR041626.1 See Comparison
NZ_CP142096.1 See Comparison
PP622803.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MK123268.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_KU726616.1 See Comparison
NZ_KX786648.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_MH995508.1 See Comparison
NZ_MN310375.1 See Comparison
NZ_KJ588779.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_CP117223.1 See Comparison
NZ_MN603981.1 See Comparison
NZ_MZ606384.2 See Comparison
NZ_MZ546616.1 See Comparison
NZ_OK500123.1 See Comparison
NZ_MZ606383.1 See Comparison
NZ_CP087274.1 See Comparison
NZ_OL389795.1 See Comparison
NZ_CP090205.1 See Comparison
NZ_CP006661.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_CP018817.1 See Comparison
NZ_CP020056.1 See Comparison
NZ_CP096368.1 See Comparison
NZ_CP022126.1 See Comparison
NC_019158.1 See Comparison
NZ_CP040884.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_CP137204.1 See Comparison
NZ_MK123268.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_OR041626.1 See Comparison
PP622803.1 See Comparison
NZ_CP132611.1 See Comparison
NZ_OQ750828.1 See Comparison
NZ_CP142096.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_CP117223.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_KX786648.1 See Comparison
NZ_KU726616.1 See Comparison
NZ_MN310375.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_MH995508.1 See Comparison
NZ_KJ588779.1 See Comparison
NZ_MN603981.1 See Comparison
NZ_CP087274.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_MZ546616.1 See Comparison
NZ_OK500123.1 See Comparison
NZ_MZ606384.2 See Comparison
NZ_OL389795.1 See Comparison
NZ_CP090205.1 See Comparison
NZ_CP020056.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_MZ606383.1 See Comparison
NZ_CP006661.1 See Comparison
NZ_CP018817.1 See Comparison
NZ_CP022126.1 See Comparison
NC_019158.1 See Comparison
NZ_CP040884.1 See Comparison
NZ_CP096368.1 See Comparison
NZ_CP137204.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore