Plasmid NZ_CP015838.1

Sequence

Nucleotide Information

Accession NZ_CP015838.1
Description Escherichia coli strain MS6198 plasmid pMS6198D, complete sequence
Source refseq
Topology circular
Length 50899 bp
GC Content 0.50 %
Created at NCBI Sept. 9, 2016



Assembly

Genome Data Information

Accession GCF_001721525.1
Assembly Coverage 120


Biosample

Curated Collection Information
Accession 4939501

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP019806.1 See Comparison
NZ_CP085071.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP085071.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP085071.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_CP085071.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_CP085071.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP085071.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_CP015838.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_KY463221.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore