Plasmid NZ_CP006661.1

Sequence

Nucleotide Information

Accession	NZ_CP006661.1
Description	Klebsiella pneumoniae strain ATCC BAA-2146 plasmid pNDM-US, complete sequence
Source	refseq
Topology	circular
Length	140825 bp
GC Content	0.52 %
Created at NCBI	Jan. 21, 2015

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_000364385.3
Assembly Coverage	85

Biosample

Curated Collection Information

Accession	2152539

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	40.4230N;98.7372W
Original Query Type	coordinates
Coordinates (Lat/Lon)	40.42/-98.74
Address	2430, F Road, Kearney County, Nebraska, 68959, United States

ECOSYSTEM

Original Query	Homo sapiens,urine,hospital patients
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	urinary tract infection
DOID/SYMP	Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP107062.1	See Comparison
NZ_CP117223.1	See Comparison
NZ_OK500123.1	See Comparison
NZ_MZ606384.2	See Comparison
NZ_CP087274.1	See Comparison
NC_019158.1	See Comparison
NZ_CP021936.1	See Comparison
NZ_CP020056.1	See Comparison
NZ_CP018817.1	See Comparison
NZ_CP015835.1	See Comparison
NZ_CP096321.1	See Comparison
NZ_CP022126.1	See Comparison
NZ_CP096368.1	See Comparison
NZ_CP096331.1	See Comparison
NZ_CP096329.1	See Comparison
NZ_CP096324.1	See Comparison
NZ_CP096327.1	See Comparison
NZ_MH995506.1	See Comparison
NZ_CP132611.1	See Comparison
NZ_OQ750828.1	See Comparison
PP622803.1	See Comparison
NZ_CP142096.1	See Comparison
NZ_CP050164.1	See Comparison
NZ_MK123268.1	See Comparison
NZ_MH995507.1	See Comparison
NZ_MH263652.1	See Comparison
NZ_MK123267.1	See Comparison
NZ_MH995508.1	See Comparison
NZ_MK041212.1	See Comparison
NZ_KX786648.1	See Comparison
NZ_MZ606384.2	See Comparison
NZ_KJ588779.1	See Comparison
NZ_CP117223.1	See Comparison
NZ_CP107062.1	See Comparison
NZ_OK500123.1	See Comparison
NZ_CP018817.1	See Comparison
NZ_CP021936.1	See Comparison
NZ_CP087274.1	See Comparison
NZ_CP020056.1	See Comparison
NC_019158.1	See Comparison
NZ_CP015835.1	See Comparison
NZ_CP096368.1	See Comparison
NZ_CP022126.1	See Comparison
NZ_CP132611.1	See Comparison
NZ_CP096321.1	See Comparison
NZ_CP096331.1	See Comparison
NZ_CP096329.1	See Comparison
NZ_CP096324.1	See Comparison
NZ_CP096327.1	See Comparison
NZ_MK123267.1	See Comparison
NZ_OQ750828.1	See Comparison
PP622803.1	See Comparison
NZ_CP142096.1	See Comparison
NZ_CP050164.1	See Comparison
NZ_MK123268.1	See Comparison
NZ_MH995507.1	See Comparison
NZ_MH263652.1	See Comparison
NZ_MH995508.1	See Comparison
NZ_MH995506.1	See Comparison
NZ_MK041212.1	See Comparison
NZ_CP117223.1	See Comparison
NZ_KX786648.1	See Comparison
NZ_KJ588779.1	See Comparison
NZ_CP107062.1	See Comparison
NZ_OK500123.1	See Comparison
NZ_CP021936.1	See Comparison
NZ_MZ606384.2	See Comparison
NZ_CP087274.1	See Comparison
NZ_CP096368.1	See Comparison
NZ_CP020056.1	See Comparison
NZ_CP018817.1	See Comparison
NC_019158.1	See Comparison
NZ_CP015835.1	See Comparison
NZ_MK123267.1	See Comparison
NZ_CP132611.1	See Comparison
NZ_OQ750828.1	See Comparison
NZ_CP142096.1	See Comparison
NZ_CP022126.1	See Comparison
NZ_CP096321.1	See Comparison
NZ_CP096331.1	See Comparison
NZ_CP096329.1	See Comparison
NZ_CP096324.1	See Comparison
NZ_CP096327.1	See Comparison
PP622803.1	See Comparison
NZ_CP050164.1	See Comparison
NZ_MH995507.1	See Comparison
NZ_MK123268.1	See Comparison
NZ_MH995508.1	See Comparison
NZ_MH263652.1	See Comparison
NZ_KX786648.1	See Comparison
NZ_MH995506.1	See Comparison
NZ_MK041212.1	See Comparison
NZ_KJ588779.1	See Comparison
NZ_CP107062.1	See Comparison
NZ_OK500123.1	See Comparison
NZ_CP117223.1	See Comparison
NZ_CP096368.1	See Comparison
NZ_MZ606384.2	See Comparison
NZ_CP021936.1	See Comparison
NZ_CP018817.1	See Comparison
NZ_CP015835.1	See Comparison
NC_019158.1	See Comparison
NZ_CP087274.1	See Comparison
NZ_CP020056.1	See Comparison
NZ_CP096321.1	See Comparison
NZ_CP022126.1	See Comparison
NZ_CP096331.1	See Comparison
NZ_CP096329.1	See Comparison
NZ_CP096324.1	See Comparison
NZ_CP096327.1	See Comparison
PP622803.1	See Comparison
NZ_OQ750828.1	See Comparison
NZ_CP132611.1	See Comparison
NZ_CP142096.1	See Comparison
NZ_MK123267.1	See Comparison
NZ_CP050164.1	See Comparison
NZ_MK123268.1	See Comparison
NZ_MH995507.1	See Comparison
NZ_CP107062.1	See Comparison
NZ_MH263652.1	See Comparison
NZ_KX786648.1	See Comparison
NZ_MH995506.1	See Comparison
NZ_MK041212.1	See Comparison
NZ_MH995508.1	See Comparison
NZ_KJ588779.1	See Comparison
NZ_CP117223.1	See Comparison
NZ_CP087274.1	See Comparison
NZ_OK500123.1	See Comparison
NZ_MZ606384.2	See Comparison
NZ_CP020056.1	See Comparison
NZ_CP021936.1	See Comparison
NZ_CP096368.1	See Comparison
NZ_CP018817.1	See Comparison
NC_019158.1	See Comparison
NZ_CP015835.1	See Comparison
NZ_CP132611.1	See Comparison
NZ_CP022126.1	See Comparison
NZ_CP096321.1	See Comparison
NZ_CP096331.1	See Comparison
NZ_CP096329.1	See Comparison
NZ_CP096324.1	See Comparison
NZ_CP096327.1	See Comparison
NZ_MK123267.1	See Comparison
NZ_OQ750828.1	See Comparison
PP622803.1	See Comparison
NZ_CP142096.1	See Comparison
NZ_CP050164.1	See Comparison
NZ_MK041212.1	See Comparison
NZ_MK123268.1	See Comparison
NZ_MH995507.1	See Comparison
NZ_MH995508.1	See Comparison
NZ_CP117223.1	See Comparison
NZ_MH263652.1	See Comparison
NZ_KJ588779.1	See Comparison
NZ_MH995506.1	See Comparison
NZ_KX786648.1	See Comparison
NZ_CP107062.1	See Comparison
NZ_OK500123.1	See Comparison
NZ_MZ606384.2	See Comparison
NZ_CP015835.1	See Comparison
NZ_CP087274.1	See Comparison
NZ_CP021936.1	See Comparison
NZ_CP018817.1	See Comparison
NZ_CP020056.1	See Comparison
NZ_CP022126.1	See Comparison
NC_019158.1	See Comparison
NZ_CP006661.1	See Comparison
NZ_CP142096.1	See Comparison
NZ_CP096368.1	See Comparison
NZ_CP096321.1	See Comparison
NZ_CP096331.1	See Comparison
NZ_CP096329.1	See Comparison
NZ_CP096324.1	See Comparison
NZ_CP096327.1	See Comparison
NZ_OQ750828.1	See Comparison
NZ_CP132611.1	See Comparison
PP622803.1	See Comparison
NZ_MK123268.1	See Comparison
NZ_CP050164.1	See Comparison
NZ_MK123267.1	See Comparison
NZ_KX786648.1	See Comparison
NZ_MH263652.1	See Comparison
NZ_MH995506.1	See Comparison
NZ_MK041212.1	See Comparison
NZ_MH995508.1	See Comparison
NZ_MH995507.1	See Comparison
NZ_KJ588779.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore