Plasmid NZ_CP137204.1

Sequence

Nucleotide Information

Accession NZ_CP137204.1
Description Citrobacter freundii strain F2613 plasmid pF2613-NDM, complete sequence
Source refseq
Topology circular
Length 142801 bp
GC Content 0.52 %
Created at NCBI Nov. 21, 2023



Assembly

Genome Data Information

Accession GCF_036289225.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 37934872

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.86N;121.56E
Original Query Type coordinates
Coordinates (Lat/Lon) 29.86/121.56
Address Baihe, Yinzhou District, Ningbo, Zhejiang, 315000, China

ECOSYSTEM
Original Query Homo sapiens,Cervical discharge
Classification host_associated,vaginal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Vaginitis
DOID/SYMP
  • Vaginitis (DOID:2170 )
    • A vaginal disease that is characterized by inflammation of the vagina.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP021936.1 See Comparison
NZ_CP015835.1 See Comparison
NC_019158.1 See Comparison
NZ_CP096368.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_CP132611.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_CP132611.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_CP015835.1 See Comparison
NC_019158.1 See Comparison
NZ_CP096368.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_OK500123.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_OK500123.1 See Comparison
NC_019158.1 See Comparison
NZ_CP015835.1 See Comparison
NZ_CP137204.1 See Comparison
NZ_CP096368.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_CP132611.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_OK500123.1 See Comparison
NC_019158.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_CP015835.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_CP096368.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_CP132611.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_CP132611.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_OK500123.1 See Comparison
NZ_CP096368.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_CP015835.1 See Comparison
NC_019158.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_CP021936.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_OK500123.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_CP107062.1 See Comparison
NZ_CP132611.1 See Comparison
NZ_CP096368.1 See Comparison
NZ_CP096321.1 See Comparison
NZ_CP096331.1 See Comparison
NZ_CP096329.1 See Comparison
NZ_CP096324.1 See Comparison
NZ_CP096327.1 See Comparison
NZ_CP137231.1 See Comparison
NZ_CP015835.1 See Comparison
NC_019158.1 See Comparison
NZ_MK123267.1 See Comparison
NZ_CP050164.1 See Comparison
NZ_MH995507.1 See Comparison
NZ_MK041212.1 See Comparison
NZ_MH263652.1 See Comparison
NZ_OK500123.1 See Comparison
NZ_MH995506.1 See Comparison
NZ_CP107062.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore