Plasmid NZ_CP012629.1

Sequence

Nucleotide Information

Accession NZ_CP012629.1
Description Escherichia coli strain SF-468 plasmid pSF-468-4, complete sequence
Source refseq
Topology circular
Length 4072 bp
GC Content 0.50 %
Created at NCBI Jan. 27, 2016



Assembly

Genome Data Information

Accession GCF_001280345.1
Assembly Coverage 90


Biosample

Curated Collection Information
Accession 4026228

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.755651N;122.404572W
Original Query Type coordinates
Coordinates (Lat/Lon) 37.76/-122.40
Address San Francisco General Hospital, 1001, Potrero Avenue, Mission District, San Francisco, California, 94158, United States

ECOSYSTEM
Original Query Homo sapiens,patient blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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CP057711.1 See Comparison
CP056905.1 See Comparison
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NZ_CP043410.1 See Comparison
CP052384.1 See Comparison
NZ_CP051723.1 See Comparison
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NZ_CP070120.1 See Comparison
NZ_CP069888.1 See Comparison
NZ_CP149847.1 See Comparison
CP056616.1 See Comparison
CP056611.1 See Comparison
CP056602.1 See Comparison
NZ_AP022220.1 See Comparison
NZ_OP242266.1 See Comparison
NZ_CP113491.1 See Comparison
CP114339.1 See Comparison
CP114350.1 See Comparison
NZ_CP107013.1 See Comparison
NZ_CP085702.1 See Comparison
NZ_CP103543.1 See Comparison
NZ_CP101230.1 See Comparison
NZ_CP101207.1 See Comparison
NZ_CP100681.1 See Comparison
NZ_CP096830.1 See Comparison
CP088350.1 See Comparison
CP088720.1 See Comparison
NZ_CP015142.1 See Comparison
NZ_CP072862.1 See Comparison
NZ_CP071079.1 See Comparison
NZ_CP151319.1 See Comparison
NC_010885.1 See Comparison
NZ_CP023824.1 See Comparison
NZ_CP135252.1 See Comparison
NZ_CP124466.1 See Comparison
NZ_OZ038593.1 See Comparison
NZ_CP082071.1 See Comparison
NZ_CP124479.1 See Comparison
NZ_CP140629.1 See Comparison
NZ_CP149847.1 See Comparison
NZ_CP148369.1 See Comparison
NZ_CP148336.1 See Comparison
NZ_CP107239.1 See Comparison
CP057720.1 See Comparison
CP057711.1 See Comparison
CP056905.1 See Comparison
CP056634.1 See Comparison
CP056616.1 See Comparison
CP056611.1 See Comparison
CP056602.1 See Comparison
NZ_CP043410.1 See Comparison
NZ_CP051723.1 See Comparison
CP052384.1 See Comparison
NZ_OP242266.1 See Comparison
NZ_CP070120.1 See Comparison
NZ_CP069888.1 See Comparison
NZ_CP070014.1 See Comparison
NZ_AP022176.1 See Comparison
NZ_AP022220.1 See Comparison
NZ_CP113491.1 See Comparison
CP114339.1 See Comparison
CP114350.1 See Comparison
NZ_CP107013.1 See Comparison
NZ_CP100681.1 See Comparison
NZ_CP103543.1 See Comparison
NZ_CP101230.1 See Comparison
NZ_CP096830.1 See Comparison
NZ_CP101207.1 See Comparison
CP088720.1 See Comparison
CP088350.1 See Comparison
NZ_CP015142.1 See Comparison
NZ_CP072862.1 See Comparison
NZ_CP071079.1 See Comparison
NZ_CP012629.1 See Comparison
NZ_CP085702.1 See Comparison
NC_010885.1 See Comparison
NZ_CP082071.1 See Comparison
NZ_CP135252.1 See Comparison
NZ_CP023824.1 See Comparison
NZ_CP148369.1 See Comparison
NZ_CP124479.1 See Comparison
NZ_CP151319.1 See Comparison
NZ_CP149847.1 See Comparison
NZ_CP124466.1 See Comparison
NZ_OZ038593.1 See Comparison
NZ_CP148336.1 See Comparison
NZ_CP043410.1 See Comparison
NZ_CP107239.1 See Comparison
CP057720.1 See Comparison
CP057711.1 See Comparison
NZ_CP140629.1 See Comparison
CP056905.1 See Comparison
CP056634.1 See Comparison
CP056616.1 See Comparison
CP056611.1 See Comparison
CP056602.1 See Comparison
CP052384.1 See Comparison
NZ_CP070014.1 See Comparison
NZ_CP051723.1 See Comparison
NZ_CP070120.1 See Comparison
NZ_CP069888.1 See Comparison
NZ_AP022176.1 See Comparison
NZ_AP022220.1 See Comparison
NZ_OP242266.1 See Comparison
NZ_CP113491.1 See Comparison
CP114339.1 See Comparison
CP114350.1 See Comparison
NZ_CP103543.1 See Comparison
NZ_CP107013.1 See Comparison
NZ_CP101230.1 See Comparison
NZ_CP101207.1 See Comparison
NZ_CP096830.1 See Comparison
NZ_CP100681.1 See Comparison
NZ_CP124466.1 See Comparison
CP088720.1 See Comparison
CP088350.1 See Comparison
NZ_CP072862.1 See Comparison
NZ_CP071079.1 See Comparison
NC_010885.1 See Comparison
NZ_CP023824.1 See Comparison
NZ_CP135252.1 See Comparison
NZ_CP082071.1 See Comparison
NZ_CP085702.1 See Comparison
NZ_CP015142.1 See Comparison
NZ_CP124479.1 See Comparison
NZ_CP148336.1 See Comparison
NZ_CP151319.1 See Comparison
NZ_OZ038593.1 See Comparison
NZ_CP149847.1 See Comparison
CP052384.1 See Comparison
NZ_CP107239.1 See Comparison
NZ_CP140629.1 See Comparison
CP056905.1 See Comparison
CP056634.1 See Comparison
CP056616.1 See Comparison
CP056611.1 See Comparison
CP056602.1 See Comparison
NZ_CP043410.1 See Comparison
NZ_CP148369.1 See Comparison
CP057720.1 See Comparison
CP057711.1 See Comparison
NZ_CP070014.1 See Comparison
NZ_CP051723.1 See Comparison
NZ_CP070120.1 See Comparison
NZ_CP069888.1 See Comparison
NZ_AP022176.1 See Comparison
NZ_AP022220.1 See Comparison
NZ_OP242266.1 See Comparison
NZ_CP113491.1 See Comparison
CP114339.1 See Comparison
CP114350.1 See Comparison
NZ_CP103543.1 See Comparison
NZ_CP107013.1 See Comparison
NZ_CP101230.1 See Comparison
NZ_CP101207.1 See Comparison
NZ_CP100681.1 See Comparison
NZ_CP096830.1 See Comparison
NZ_CP015142.1 See Comparison
CP088720.1 See Comparison
CP088350.1 See Comparison
NZ_CP071079.1 See Comparison
NZ_CP085702.1 See Comparison
NZ_CP072862.1 See Comparison
NZ_CP124479.1 See Comparison
NC_010885.1 See Comparison
NZ_CP023824.1 See Comparison
NZ_CP135252.1 See Comparison
NZ_CP082071.1 See Comparison
NZ_CP151319.1 See Comparison
NZ_OZ038593.1 See Comparison
NZ_CP124466.1 See Comparison
NZ_CP149847.1 See Comparison
NZ_CP148336.1 See Comparison
CP052384.1 See Comparison
NZ_CP148369.1 See Comparison
NZ_CP107239.1 See Comparison
NZ_CP140629.1 See Comparison
CP056905.1 See Comparison
CP056634.1 See Comparison
CP056616.1 See Comparison
CP056611.1 See Comparison
CP056602.1 See Comparison
NZ_CP043410.1 See Comparison
CP057720.1 See Comparison
CP057711.1 See Comparison
NZ_CP070014.1 See Comparison
NZ_CP051723.1 See Comparison
NZ_CP070120.1 See Comparison
NZ_CP069888.1 See Comparison
NZ_CP113491.1 See Comparison
CP114339.1 See Comparison
CP114350.1 See Comparison
NZ_AP022176.1 See Comparison
NZ_AP022220.1 See Comparison
NZ_OP242266.1 See Comparison
NZ_CP103543.1 See Comparison
NZ_CP107013.1 See Comparison
NZ_CP101230.1 See Comparison
NZ_CP100681.1 See Comparison
NZ_CP101207.1 See Comparison
NZ_CP072862.1 See Comparison
NZ_CP096830.1 See Comparison
NZ_CP085702.1 See Comparison
CP088720.1 See Comparison
CP088350.1 See Comparison
NZ_CP071079.1 See Comparison
NZ_CP151319.1 See Comparison
NC_010885.1 See Comparison
NZ_CP023824.1 See Comparison
NZ_CP135252.1 See Comparison
NZ_CP082071.1 See Comparison
NZ_OZ038593.1 See Comparison
NZ_CP015142.1 See Comparison
NZ_CP124466.1 See Comparison
NZ_CP124479.1 See Comparison
CP052384.1 See Comparison
NZ_CP148336.1 See Comparison
NZ_CP148369.1 See Comparison
NZ_CP107239.1 See Comparison
NZ_CP140629.1 See Comparison
CP056905.1 See Comparison
CP056634.1 See Comparison
CP056616.1 See Comparison
CP056611.1 See Comparison
CP056602.1 See Comparison
NZ_CP149847.1 See Comparison
CP057720.1 See Comparison
CP057711.1 See Comparison
NZ_CP043410.1 See Comparison
NZ_CP051723.1 See Comparison
NZ_CP070014.1 See Comparison
NZ_CP070120.1 See Comparison
NZ_CP069888.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore