Plasmid NZ_CP012630.1

Sequence

Nucleotide Information

Accession NZ_CP012630.1
Description Escherichia coli strain SF-468 plasmid pSF-468-5, complete sequence
Source refseq
Topology circular
Length 1551 bp
GC Content 0.52 %
Created at NCBI Jan. 27, 2016



Assembly

Genome Data Information

Accession GCF_001280345.1
Assembly Coverage 90


Biosample

Curated Collection Information
Accession 4026228

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.755651N;122.404572W
Original Query Type coordinates
Coordinates (Lat/Lon) 37.76/-122.40
Address San Francisco General Hospital, 1001, Potrero Avenue, Mission District, San Francisco, California, 94158, United States

ECOSYSTEM
Original Query Homo sapiens,patient blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP060986.1 See Comparison
CP090280.1 See Comparison
CP077360.1 See Comparison
CP077356.1 See Comparison
CP077252.1 See Comparison
NZ_CP115355.1 See Comparison
NZ_CP029183.1 See Comparison
OX030759.1 See Comparison
NZ_CP148460.1 See Comparison
NZ_CP148422.1 See Comparison
NZ_CP070032.1 See Comparison
NZ_CP101221.1 See Comparison
CP057721.1 See Comparison
CP057712.1 See Comparison
NZ_AP022331.1 See Comparison
OX030727.1 See Comparison
OX030717.1 See Comparison
OW969926.1 See Comparison
OW969848.1 See Comparison
OW968468.1 See Comparison
OW968382.1 See Comparison
OW968224.1 See Comparison
OW968373.1 See Comparison
OW968275.1 See Comparison
NZ_CP060986.1 See Comparison
CP077360.1 See Comparison
CP090280.1 See Comparison
CP077356.1 See Comparison
CP077252.1 See Comparison
NZ_CP070032.1 See Comparison
NZ_CP029183.1 See Comparison
NZ_CP115355.1 See Comparison
NZ_CP148460.1 See Comparison
NZ_CP148422.1 See Comparison
CP057721.1 See Comparison
CP057712.1 See Comparison
NZ_AP022331.1 See Comparison
OW969926.1 See Comparison
NZ_CP101221.1 See Comparison
OX030759.1 See Comparison
OX030727.1 See Comparison
OX030717.1 See Comparison
OW969848.1 See Comparison
OW968468.1 See Comparison
OW968382.1 See Comparison
OW968224.1 See Comparison
OW968373.1 See Comparison
OW968275.1 See Comparison
CP090280.1 See Comparison
NZ_CP060986.1 See Comparison
NZ_CP148460.1 See Comparison
CP077360.1 See Comparison
CP077356.1 See Comparison
CP077252.1 See Comparison
NZ_CP029183.1 See Comparison
NZ_CP115355.1 See Comparison
NZ_CP148422.1 See Comparison
CP057721.1 See Comparison
CP057712.1 See Comparison
OW969926.1 See Comparison
NZ_AP022331.1 See Comparison
NZ_CP101221.1 See Comparison
OX030759.1 See Comparison
OX030727.1 See Comparison
OX030717.1 See Comparison
NZ_CP070032.1 See Comparison
OW969848.1 See Comparison
OW968468.1 See Comparison
OW968382.1 See Comparison
OW968373.1 See Comparison
OW968275.1 See Comparison
OW968224.1 See Comparison
NZ_CP060986.1 See Comparison
NZ_CP029183.1 See Comparison
CP090280.1 See Comparison
CP077360.1 See Comparison
CP077356.1 See Comparison
CP077252.1 See Comparison
NZ_CP060986.1 See Comparison
NZ_CP115355.1 See Comparison
NZ_CP148460.1 See Comparison
NZ_CP148422.1 See Comparison
CP057721.1 See Comparison
CP057712.1 See Comparison
NZ_CP070032.1 See Comparison
NZ_AP022331.1 See Comparison
NZ_CP101221.1 See Comparison
OX030759.1 See Comparison
OX030727.1 See Comparison
OX030717.1 See Comparison
OW969926.1 See Comparison
OW969848.1 See Comparison
OW968468.1 See Comparison
OW968382.1 See Comparison
OW968373.1 See Comparison
OW968275.1 See Comparison
OW968224.1 See Comparison
NZ_CP115355.1 See Comparison
CP077360.1 See Comparison
CP077356.1 See Comparison
CP077252.1 See Comparison
NZ_CP029183.1 See Comparison
CP090280.1 See Comparison
OW969926.1 See Comparison
NZ_CP148460.1 See Comparison
NZ_CP148422.1 See Comparison
CP057721.1 See Comparison
CP057712.1 See Comparison
NZ_CP070032.1 See Comparison
NZ_AP022331.1 See Comparison
OX030759.1 See Comparison
OX030727.1 See Comparison
OX030717.1 See Comparison
OW969848.1 See Comparison
OW968468.1 See Comparison
OW968373.1 See Comparison
OW968275.1 See Comparison
OW968224.1 See Comparison
OW968382.1 See Comparison
CP090280.1 See Comparison
NZ_CP060986.1 See Comparison
NZ_CP101221.1 See Comparison
CP077360.1 See Comparison
CP077356.1 See Comparison
CP077252.1 See Comparison
NZ_CP115355.1 See Comparison
NZ_CP012630.1 See Comparison
NZ_CP029183.1 See Comparison
OW968275.1 See Comparison
NZ_CP070032.1 See Comparison
NZ_AP022331.1 See Comparison
NZ_CP101221.1 See Comparison
OX030759.1 See Comparison
OX030727.1 See Comparison
OX030717.1 See Comparison
OW968468.1 See Comparison
NZ_CP148460.1 See Comparison
NZ_CP148422.1 See Comparison
CP057721.1 See Comparison
CP057712.1 See Comparison
OW969926.1 See Comparison
OW969848.1 See Comparison
OW968224.1 See Comparison
CP090280.1 See Comparison
NZ_CP060986.1 See Comparison
OW968382.1 See Comparison
OW968373.1 See Comparison
NZ_AP022331.1 See Comparison
CP077356.1 See Comparison
CP077252.1 See Comparison
CP057721.1 See Comparison
CP057712.1 See Comparison
CP077360.1 See Comparison
NZ_CP029183.1 See Comparison
NZ_CP115355.1 See Comparison
NZ_CP148460.1 See Comparison
NZ_CP148422.1 See Comparison
NZ_CP070032.1 See Comparison
OX030727.1 See Comparison
NZ_CP101221.1 See Comparison
OX030717.1 See Comparison
OX030759.1 See Comparison
OW969848.1 See Comparison
OW969926.1 See Comparison
OW968468.1 See Comparison
OW968382.1 See Comparison
OW968275.1 See Comparison
OW968373.1 See Comparison
OW968224.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2