Plasmid NZ_AP027482.1

Sequence

Nucleotide Information

Accession NZ_AP027482.1
Description Escherichia coli strain LR-17-1 plasmid pLR-17-1_3, complete sequence
Source refseq
Topology circular
Length 3071 bp
GC Content 0.48 %
Created at NCBI April 4, 2024



Assembly

Genome Data Information

Accession GCF_036494325.1
Assembly Coverage 101


Biosample

Curated Collection Information
Accession 38124446

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Ecuador,Santo Domingo
Original Query Type name
Coordinates (Lat/Lon) -0.34/-79.17
Address Ecuador,Santo Domingo

ECOSYSTEM
Original Query Homo sapiens,whole organism,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP119513.1 See Comparison
NZ_CP101909.1 See Comparison
NZ_CP101942.1 See Comparison
CP082448.1 See Comparison
CP082481.1 See Comparison
CP082477.1 See Comparison
NC_019084.1 See Comparison
NC_013782.1 See Comparison
NZ_CP141741.1 See Comparison
CP043749.1 See Comparison
CP043760.1 See Comparison
CP043756.1 See Comparison
CP082379.2 See Comparison
CP123710.1 See Comparison
NZ_AP027518.1 See Comparison
NZ_KY991369.1 See Comparison
CP057009.1 See Comparison
CP082448.1 See Comparison
CP066334.1 See Comparison
NZ_CP101909.1 See Comparison
NZ_CP101942.1 See Comparison
NZ_CP069577.1 See Comparison
NZ_AP022153.1 See Comparison
CP119513.1 See Comparison
CP082481.1 See Comparison
CP082477.1 See Comparison
NZ_AP027518.1 See Comparison
NC_019084.1 See Comparison
NC_013782.1 See Comparison
CP123710.1 See Comparison
CP043749.1 See Comparison
CP043760.1 See Comparison
CP043756.1 See Comparison
CP082379.2 See Comparison
NZ_AP027482.1 See Comparison
NZ_CP141741.1 See Comparison
CP057009.1 See Comparison
CP119513.1 See Comparison
NZ_KY991369.1 See Comparison
NZ_CP069577.1 See Comparison
CP066334.1 See Comparison
NZ_AP022153.1 See Comparison
NC_013782.1 See Comparison
NZ_CP101909.1 See Comparison
NZ_CP101942.1 See Comparison
CP082448.1 See Comparison
CP082481.1 See Comparison
CP082477.1 See Comparison
NC_019084.1 See Comparison
CP043749.1 See Comparison
CP043760.1 See Comparison
CP043756.1 See Comparison
CP123710.1 See Comparison
CP082379.2 See Comparison
NZ_AP027518.1 See Comparison
NZ_CP141741.1 See Comparison
CP119513.1 See Comparison
CP057009.1 See Comparison
NZ_KY991369.1 See Comparison
NZ_CP069577.1 See Comparison
CP066334.1 See Comparison
NZ_AP022153.1 See Comparison
NZ_CP101909.1 See Comparison
NZ_CP101942.1 See Comparison
CP082448.1 See Comparison
CP082481.1 See Comparison
CP082477.1 See Comparison
NZ_CP069577.1 See Comparison
NC_013782.1 See Comparison
CP043749.1 See Comparison
CP043760.1 See Comparison
CP043756.1 See Comparison
CP123710.1 See Comparison
CP082379.2 See Comparison
NZ_AP027518.1 See Comparison
NZ_CP141741.1 See Comparison
NC_019084.1 See Comparison
CP057009.1 See Comparison
NZ_KY991369.1 See Comparison
CP119513.1 See Comparison
CP066334.1 See Comparison
NZ_AP022153.1 See Comparison
NZ_CP101909.1 See Comparison
NZ_CP101942.1 See Comparison
NC_019084.1 See Comparison
CP082448.1 See Comparison
CP082481.1 See Comparison
CP082477.1 See Comparison
CP082448.1 See Comparison
CP057009.1 See Comparison
NZ_CP069577.1 See Comparison
CP066334.1 See Comparison
NZ_AP022153.1 See Comparison
NC_013782.1 See Comparison
CP043749.1 See Comparison
CP043760.1 See Comparison
CP043756.1 See Comparison
CP123710.1 See Comparison
CP082379.2 See Comparison
NZ_AP027518.1 See Comparison
NZ_CP141741.1 See Comparison
NZ_KY991369.1 See Comparison
CP119513.1 See Comparison
NZ_CP101909.1 See Comparison
NZ_CP101942.1 See Comparison
CP082481.1 See Comparison
CP082477.1 See Comparison
NC_013782.1 See Comparison
NC_019084.1 See Comparison
CP057009.1 See Comparison
CP043749.1 See Comparison
CP043760.1 See Comparison
CP043756.1 See Comparison
CP082379.2 See Comparison
CP123710.1 See Comparison
NZ_AP027518.1 See Comparison
NZ_CP141741.1 See Comparison
NZ_AP022153.1 See Comparison
NZ_KY991369.1 See Comparison
NZ_CP069577.1 See Comparison
CP066334.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore