Plasmid NZ_KY991369.1

Sequence

Nucleotide Information

Accession	NZ_KY991369.1
Description	Salmonella enterica subsp. enterica serovar Anatum strain CVM N57952F plasmid N57952F_qnrB19, complete sequence
Source	refseq
Topology	circular
Length	3071 bp
GC Content	0.48 %
Created at NCBI	June 3, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (58712)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Biosample

Curated Collection Information

Accession	14227802

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	None
Original Query Type	None
Coordinates (Lat/Lon)
Address	None

ECOSYSTEM

Original Query	USA
Classification	location
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

CP082379.2	See Comparison
NZ_AP027518.1	See Comparison
NZ_AP027482.1	See Comparison
NZ_CP141741.1	See Comparison
CP057009.1	See Comparison
NZ_CP069577.1	See Comparison
CP066334.1	See Comparison
NZ_AP022153.1	See Comparison
CP119513.1	See Comparison
CP082448.1	See Comparison
NZ_CP101909.1	See Comparison
NZ_CP101942.1	See Comparison
CP082481.1	See Comparison
CP082477.1	See Comparison
CP043749.1	See Comparison
NC_013782.1	See Comparison
NC_019084.1	See Comparison
CP043760.1	See Comparison
CP043756.1	See Comparison
NZ_AP027518.1	See Comparison
NZ_CP141741.1	See Comparison
CP123710.1	See Comparison
CP082379.2	See Comparison
NZ_AP027482.1	See Comparison
CP082379.2	See Comparison
CP057009.1	See Comparison
NZ_CP069577.1	See Comparison
CP119513.1	See Comparison
NZ_CP101909.1	See Comparison
NZ_CP101942.1	See Comparison
CP082448.1	See Comparison
CP082481.1	See Comparison
CP082477.1	See Comparison
NC_019084.1	See Comparison
CP123710.1	See Comparison
CP066334.1	See Comparison
NZ_AP022153.1	See Comparison
NC_013782.1	See Comparison
CP043749.1	See Comparison
CP043760.1	See Comparison
CP043756.1	See Comparison
NZ_CP069577.1	See Comparison
CP057009.1	See Comparison
NZ_KY991369.1	See Comparison
NZ_AP027518.1	See Comparison
NZ_AP027482.1	See Comparison
NZ_CP141741.1	See Comparison
CP066334.1	See Comparison
NZ_AP022153.1	See Comparison
NZ_CP101909.1	See Comparison
CP119513.1	See Comparison
NZ_CP101942.1	See Comparison
NC_013782.1	See Comparison
CP082448.1	See Comparison
CP082481.1	See Comparison
CP082477.1	See Comparison
NC_019084.1	See Comparison
CP043749.1	See Comparison
CP043760.1	See Comparison
CP043756.1	See Comparison
NZ_AP027518.1	See Comparison
CP123710.1	See Comparison
CP082379.2	See Comparison
NZ_AP027482.1	See Comparison
NZ_CP141741.1	See Comparison
NZ_AP022153.1	See Comparison
CP066334.1	See Comparison
CP057009.1	See Comparison
NZ_CP069577.1	See Comparison
CP082481.1	See Comparison
CP119513.1	See Comparison
NZ_CP101909.1	See Comparison
NZ_CP101942.1	See Comparison
CP082477.1	See Comparison
NZ_CP101909.1	See Comparison
CP082448.1	See Comparison
NC_013782.1	See Comparison
CP043749.1	See Comparison
CP043760.1	See Comparison
CP043756.1	See Comparison
CP123710.1	See Comparison
CP082379.2	See Comparison
NZ_AP027518.1	See Comparison
NZ_AP027482.1	See Comparison
NZ_CP141741.1	See Comparison
CP066334.1	See Comparison
NZ_AP022153.1	See Comparison
NC_019084.1	See Comparison
CP057009.1	See Comparison
NZ_CP069577.1	See Comparison
CP119513.1	See Comparison
NZ_CP101942.1	See Comparison
CP082448.1	See Comparison
CP082481.1	See Comparison
CP082477.1	See Comparison
NC_019084.1	See Comparison
NZ_AP027518.1	See Comparison
NZ_AP027482.1	See Comparison
NZ_CP141741.1	See Comparison
CP119513.1	See Comparison
NZ_CP101909.1	See Comparison
NZ_CP101942.1	See Comparison
CP082448.1	See Comparison
CP082481.1	See Comparison
CP082477.1	See Comparison
CP043749.1	See Comparison
CP043760.1	See Comparison
CP043756.1	See Comparison
CP123710.1	See Comparison
NC_013782.1	See Comparison
CP043749.1	See Comparison
CP043760.1	See Comparison
CP043756.1	See Comparison
CP123710.1	See Comparison
CP082379.2	See Comparison
CP057009.1	See Comparison
NZ_CP069577.1	See Comparison
CP066334.1	See Comparison
NZ_AP022153.1	See Comparison
NC_019084.1	See Comparison
NC_013782.1	See Comparison

Identical Plasmids

100% Sequence Identity

CP043756.1

Sequence

Accession: CP043756.1
Description: Escherichia coli strain CVM N56338 plasmid pN56338-2, complete sequence
Source: insd
Created at NCBI: Sept. 15, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 12698088

GEOGRAPHICAL INFORMATION

Original Query: USA,GA
Original Query Type: name
Address: USA,GA
Coordinates (Lat/Lon): 32.33/-83.11

ECOSYSTEM

Original Query: Pork Chops
Classification: food,meat
Host-associated Taxon:

Visualization

CP043760.1

Sequence

Accession: CP043760.1
Description: Escherichia coli strain CVM N55972 plasmid pN55972-3, complete sequence
Source: insd
Created at NCBI: Sept. 15, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 12698087

GEOGRAPHICAL INFORMATION

Original Query: USA,GA
Original Query Type: name
Address: USA,GA
Coordinates (Lat/Lon): 32.33/-83.11

ECOSYSTEM

Original Query: Pork Chops
Classification: food,meat
Host-associated Taxon:

Visualization

CP043749.1

Sequence

Accession: CP043749.1
Description: Escherichia coli strain CVM N16EC0140 plasmid pN16EC0140-2, complete sequence
Source: insd
Created at NCBI: Sept. 15, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 12698091

GEOGRAPHICAL INFORMATION

Original Query: USA,OR
Original Query Type: name
Address: USA,OR
Coordinates (Lat/Lon): 43.98/-120.74

ECOSYSTEM

Original Query: Pork chops
Classification: food,meat
Host-associated Taxon:

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore