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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid CP043749.1
Sequence
Nucleotide Information
Accession
CP043749.1
Description
Escherichia coli strain CVM N16EC0140 plasmid pN16EC0140-2, complete sequence
Source
insd
Topology
circular
Length
3071 bp
GC Content
0.48 %
Created at NCBI
Sept. 15, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCA_008385405.1
Assembly Coverage
480
Biosample
Curated Collection Information
Accession
12698091
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA,OR
Original Query Type
name
Coordinates (Lat/Lon)
43.98/-120.74
Address
USA,OR
ECOSYSTEM
Original Query
Pork chops
Classification
food,meat
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
CP043748.1
Similar Plasmids
based on Mash distance
CP123710.1
See Comparison
CP082379.2
See Comparison
NZ_AP027518.1
See Comparison
NZ_AP027482.1
See Comparison
NZ_CP141741.1
See Comparison
CP057009.1
See Comparison
NZ_KY991369.1
See Comparison
NZ_CP069577.1
See Comparison
CP066334.1
See Comparison
NZ_AP022153.1
See Comparison
NZ_CP101909.1
See Comparison
CP119513.1
See Comparison
NZ_CP101942.1
See Comparison
NC_013782.1
See Comparison
CP082448.1
See Comparison
CP082481.1
See Comparison
CP082477.1
See Comparison
NC_019084.1
See Comparison
CP066334.1
See Comparison
CP043760.1
See Comparison
CP043756.1
See Comparison
CP123710.1
See Comparison
CP082379.2
See Comparison
NZ_AP027518.1
See Comparison
NZ_AP027482.1
See Comparison
NZ_CP141741.1
See Comparison
CP057009.1
See Comparison
NZ_KY991369.1
See Comparison
NZ_CP069577.1
See Comparison
NZ_AP022153.1
See Comparison
CP082448.1
See Comparison
NZ_CP101909.1
See Comparison
NZ_CP101942.1
See Comparison
CP119513.1
See Comparison
CP082481.1
See Comparison
CP082477.1
See Comparison
NC_013782.1
See Comparison
NC_019084.1
See Comparison
CP043760.1
See Comparison
CP043756.1
See Comparison
CP057009.1
See Comparison
CP123710.1
See Comparison
CP082379.2
See Comparison
CP057009.1
See Comparison
NZ_KY991369.1
See Comparison
CP066334.1
See Comparison
CP119513.1
See Comparison
NZ_CP101909.1
See Comparison
NZ_CP101942.1
See Comparison
NC_013782.1
See Comparison
CP043760.1
See Comparison
CP043756.1
See Comparison
NZ_AP027518.1
See Comparison
NZ_AP027482.1
See Comparison
NZ_CP141741.1
See Comparison
NZ_CP069577.1
See Comparison
NZ_AP022153.1
See Comparison
CP082448.1
See Comparison
CP082481.1
See Comparison
CP082477.1
See Comparison
NC_019084.1
See Comparison
CP123710.1
See Comparison
CP082379.2
See Comparison
NZ_AP027518.1
See Comparison
NZ_AP027482.1
See Comparison
NZ_CP141741.1
See Comparison
CP066334.1
See Comparison
NZ_KY991369.1
See Comparison
NZ_CP069577.1
See Comparison
NC_013782.1
See Comparison
NC_019084.1
See Comparison
NZ_AP022153.1
See Comparison
CP119513.1
See Comparison
NZ_CP101909.1
See Comparison
NZ_CP101942.1
See Comparison
CP082448.1
See Comparison
CP082481.1
See Comparison
CP082477.1
See Comparison
CP043760.1
See Comparison
CP043756.1
See Comparison
CP057009.1
See Comparison
CP123710.1
See Comparison
CP082379.2
See Comparison
NZ_AP027518.1
See Comparison
NZ_AP027482.1
See Comparison
NZ_CP141741.1
See Comparison
NZ_KY991369.1
See Comparison
CP082481.1
See Comparison
CP066334.1
See Comparison
NZ_AP022153.1
See Comparison
NZ_CP069577.1
See Comparison
CP119513.1
See Comparison
NZ_CP101909.1
See Comparison
NZ_CP101942.1
See Comparison
CP082477.1
See Comparison
CP123710.1
See Comparison
NC_019084.1
See Comparison
CP082448.1
See Comparison
NC_013782.1
See Comparison
CP043760.1
See Comparison
CP043756.1
See Comparison
NZ_AP027518.1
See Comparison
CP082379.2
See Comparison
NZ_AP027482.1
See Comparison
NZ_CP141741.1
See Comparison
NZ_KY991369.1
See Comparison
CP057009.1
See Comparison
NZ_CP069577.1
See Comparison
CP066334.1
See Comparison
CP119513.1
See Comparison
NZ_AP022153.1
See Comparison
CP082448.1
See Comparison
CP082481.1
See Comparison
CP082477.1
See Comparison
NC_013782.1
See Comparison
NZ_CP101909.1
See Comparison
NZ_CP101942.1
See Comparison
NC_019084.1
See Comparison
CP043749.1
See Comparison
CP043760.1
See Comparison
CP043756.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore