Plasmid NZ_AP026909.1

Sequence

Nucleotide Information

Accession NZ_AP026909.1
Description Escherichia coli strain MY732 plasmid pMY732-2, complete sequence
Source refseq
Topology circular
Length 61498 bp
GC Content 0.43 %
Created at NCBI Nov. 11, 2022



Assembly

Genome Data Information

Accession GCF_026074235.1
Assembly Coverage 163


Biosample

Curated Collection Information
Accession 31328128

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan,Osaka
Original Query Type name
Coordinates (Lat/Lon) 34.69/135.50
Address Japan,Osaka

ECOSYSTEM
Original Query Canis lupus familiaris,cell culture,urine
Classification cell_culture,host_associated,urinary_system
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_CP034405.1 See Comparison
LT174530.1 See Comparison
CP034400.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_MN232193.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_CP034405.1 See Comparison
CP034400.1 See Comparison
NZ_CP133929.1 See Comparison
LT174530.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_MN232193.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_CP122512.1 See Comparison
LT174530.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
CP034400.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_MN232193.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MF069152.1 See Comparison
LT174530.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_CP034405.1 See Comparison
CP034400.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_MN232193.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_CP034405.1 See Comparison
LT174530.1 See Comparison
CP034400.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MN232193.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_AP026909.1 See Comparison
NZ_CP075719.1 See Comparison
LT174530.1 See Comparison
NZ_CP034405.1 See Comparison
CP034400.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MN232193.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KY120366.1 See Comparison
LT174530.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_CP034405.1 See Comparison
CP034400.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_MN232193.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KX013538.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2