Plasmid CP034400.1

Sequence

Nucleotide Information

Accession CP034400.1
Description Escherichia coli strain CRE1 plasmid pCRE1.3, complete sequence
Source insd
Topology circular
Length 61553 bp
GC Content 0.42 %
Created at NCBI Feb. 4, 2019



Assembly

Genome Data Information

Accession GCF_004135775.1
Assembly Coverage 158


Biosample

Curated Collection Information
Accession 10531472

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 18.79038N;98.98468E
Original Query Type coordinates
Coordinates (Lat/Lon) 18.79/98.98
Address Chiang Mai District Office, Khang Ruan Jum Road, Muang Chiang Mai, Chiang Mai, Pa Daet, Saraphi District, Chiang Mai Province, 55520, Thailand

ECOSYSTEM
Original Query Homosapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MK852553.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_AP026909.1 See Comparison
LT174530.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MG594798.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_AP026909.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
LT174530.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG594798.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_CP034405.1 See Comparison
LT174530.1 See Comparison
NZ_AP026909.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG594798.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_AP026909.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
LT174530.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG594798.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_AP026909.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
LT174530.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG594798.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_AP026909.1 See Comparison
LT174530.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG594798.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_AP026909.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP034405.1 See Comparison
CP034400.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
LT174530.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG594798.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MF069152.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2