Plasmid NZ_MH522409.1

Sequence

Nucleotide Information

Accession NZ_MH522409.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain SH12G402 plasmid pSH12G402, complete sequence
Source refseq
Topology circular
Length 61340 bp
GC Content 0.42 %
Created at NCBI June 3, 2020



Biosample

Curated Collection Information
Accession 14228114

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

LT174530.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK852553.1 See Comparison
AP027406.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_AP017614.1 See Comparison
LT174530.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KX013538.1 See Comparison
AP027406.1 See Comparison
NZ_CP116975.1 See Comparison
LT174530.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MH522409.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_MG557851.1 See Comparison
AP027406.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_CP133929.1 See Comparison
LT174530.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MK852553.1 See Comparison
AP027406.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_CP034405.1 See Comparison
LT174530.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MF069152.1 See Comparison
AP027406.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_CP116975.1 See Comparison
LT174530.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_MF069152.1 See Comparison
AP027406.1 See Comparison
NZ_CP116975.1 See Comparison
LT174530.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KX013538.1 See Comparison
AP027406.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_CP116975.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2