Plasmid CP054456.1

Sequence

Nucleotide Information

Accession	CP054456.1
Description	Escherichia coli strain SCU-487 plasmid pSCU-487-2, complete sequence
Source	insd
Topology	circular
Length	4082 bp
GC Content	0.49 %
Created at NCBI	June 14, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCA_013341355.1
Assembly Coverage	47

Biosample

Curated Collection Information

Accession	14943541

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA,California
Original Query Type	name
Coordinates (Lat/Lon)	36.70/-118.76
Address	USA,California

ECOSYSTEM

Original Query	Homo sapiens,whole organism,rectal swab from healthy college student
Classification	gastrointestinal_system,host_associated,rectal
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

CP054455.1

Similar Plasmids

based on Mash distance

NZ_CP124371.1	See Comparison
NZ_OZ038771.1	See Comparison
NZ_CP145687.1	See Comparison
NZ_OR345922.1	See Comparison
NZ_KT693143.1	See Comparison
NZ_CP051748.1	See Comparison
NZ_CP033161.1	See Comparison
NZ_LR898882.1	See Comparison
NZ_LR890408.1	See Comparison
NZ_KT693144.1	See Comparison
NZ_AP022168.1	See Comparison
NZ_OP378620.1	See Comparison
NZ_OP242296.1	See Comparison
NZ_CP074491.1	See Comparison
NZ_CP053759.1	See Comparison
NZ_OW848787.1	See Comparison
NZ_CP091709.1	See Comparison
CP088815.1	See Comparison
NZ_CP059124.1	See Comparison
NZ_CP076695.1	See Comparison
NZ_LR130566.1	See Comparison
NZ_OU342908.1	See Comparison
NZ_CP035724.1	See Comparison
NZ_CP035473.1	See Comparison
NZ_CP035520.1	See Comparison
NZ_CP035481.1	See Comparison
NZ_CP033851.1	See Comparison
NZ_OZ038771.1	See Comparison
NZ_CP107124.1	See Comparison
NZ_CP082102.1	See Comparison
NZ_CP124371.1	See Comparison
NZ_CP030114.1	See Comparison
NZ_LR898882.1	See Comparison
NZ_OR345922.1	See Comparison
NZ_CP051748.1	See Comparison
NZ_CP033161.1	See Comparison
NZ_CP145687.1	See Comparison
NZ_KT693143.1	See Comparison
NZ_OP378620.1	See Comparison
NZ_LR890408.1	See Comparison
NZ_KT693144.1	See Comparison
NZ_AP022168.1	See Comparison
NZ_CP074491.1	See Comparison
NZ_OP242296.1	See Comparison
NZ_OW848787.1	See Comparison
NZ_CP053759.1	See Comparison
CP088815.1	See Comparison
NZ_CP091709.1	See Comparison
NZ_OU342908.1	See Comparison
NZ_CP059124.1	See Comparison
NZ_LR130566.1	See Comparison
NZ_CP076695.1	See Comparison
NZ_CP145687.1	See Comparison
NZ_CP082102.1	See Comparison
NZ_CP035724.1	See Comparison
NZ_CP035473.1	See Comparison
NZ_CP035520.1	See Comparison
NZ_CP035481.1	See Comparison
NZ_CP033851.1	See Comparison
NZ_CP030114.1	See Comparison
NZ_CP107124.1	See Comparison
NZ_CP124371.1	See Comparison
NZ_OZ038771.1	See Comparison
NZ_CP051748.1	See Comparison
NZ_OR345922.1	See Comparison
CP054456.1	See Comparison
NZ_KT693143.1	See Comparison
NZ_CP053759.1	See Comparison
NZ_CP033161.1	See Comparison
NZ_LR890408.1	See Comparison
NZ_OP378620.1	See Comparison
NZ_OP242296.1	See Comparison
NZ_CP074491.1	See Comparison
NZ_LR898882.1	See Comparison
NZ_KT693144.1	See Comparison
NZ_AP022168.1	See Comparison
NZ_OW848787.1	See Comparison
NZ_CP091709.1	See Comparison
NZ_CP107124.1	See Comparison
CP088815.1	See Comparison
NZ_OU342908.1	See Comparison
NZ_LR130566.1	See Comparison
NZ_CP059124.1	See Comparison
NZ_CP076695.1	See Comparison
NZ_CP035724.1	See Comparison
NZ_CP035473.1	See Comparison
NZ_CP035520.1	See Comparison
NZ_CP035481.1	See Comparison
NZ_CP033851.1	See Comparison
NZ_CP030114.1	See Comparison
NZ_CP124371.1	See Comparison
NZ_CP082102.1	See Comparison
NZ_LR890408.1	See Comparison
NZ_KT693143.1	See Comparison
NZ_CP051748.1	See Comparison
NZ_CP033161.1	See Comparison
NZ_OZ038771.1	See Comparison
NZ_CP145687.1	See Comparison
NZ_OR345922.1	See Comparison
NZ_AP022168.1	See Comparison
NZ_LR898882.1	See Comparison
NZ_KT693144.1	See Comparison
NZ_OP242296.1	See Comparison
NZ_OP378620.1	See Comparison
NZ_CP074491.1	See Comparison
NZ_CP091709.1	See Comparison
NZ_CP053759.1	See Comparison
NZ_OW848787.1	See Comparison
NZ_OU342908.1	See Comparison
CP088815.1	See Comparison
NZ_CP076695.1	See Comparison
NZ_CP059124.1	See Comparison
NZ_CP124371.1	See Comparison
NZ_CP035724.1	See Comparison
NZ_CP035473.1	See Comparison
NZ_CP035520.1	See Comparison
NZ_CP035481.1	See Comparison
NZ_CP107124.1	See Comparison
NZ_LR130566.1	See Comparison
NZ_CP033851.1	See Comparison
NZ_CP030114.1	See Comparison
NZ_CP082102.1	See Comparison
NZ_OZ038771.1	See Comparison
NZ_CP033161.1	See Comparison
NZ_CP145687.1	See Comparison
NZ_OR345922.1	See Comparison
NZ_KT693143.1	See Comparison
NZ_CP051748.1	See Comparison
NZ_LR898882.1	See Comparison
NZ_LR890408.1	See Comparison
NZ_AP022168.1	See Comparison
NZ_KT693144.1	See Comparison
NZ_OW848787.1	See Comparison
NZ_OP378620.1	See Comparison
NZ_OP242296.1	See Comparison
NZ_CP074491.1	See Comparison
NZ_CP053759.1	See Comparison
NZ_LR130566.1	See Comparison
NZ_CP091709.1	See Comparison
NZ_OU342908.1	See Comparison
NZ_CP076695.1	See Comparison
CP088815.1	See Comparison
NZ_CP059124.1	See Comparison
NZ_CP082102.1	See Comparison
NZ_CP035724.1	See Comparison
NZ_CP035473.1	See Comparison
NZ_CP035520.1	See Comparison
NZ_CP035481.1	See Comparison
NZ_CP033851.1	See Comparison
NZ_CP030114.1	See Comparison
NZ_CP107124.1	See Comparison
NZ_LR890408.1	See Comparison
NZ_CP124371.1	See Comparison
NZ_LR898882.1	See Comparison
NZ_OZ038771.1	See Comparison
NZ_CP145687.1	See Comparison
NZ_OR345922.1	See Comparison
NZ_KT693143.1	See Comparison
NZ_CP051748.1	See Comparison
NZ_CP033161.1	See Comparison
NZ_AP022168.1	See Comparison
NZ_KT693144.1	See Comparison
NZ_OP378620.1	See Comparison
NZ_CP091709.1	See Comparison
NZ_OP242296.1	See Comparison
NZ_CP074491.1	See Comparison
NZ_CP053759.1	See Comparison
NZ_OW848787.1	See Comparison
NZ_CP059124.1	See Comparison
CP088815.1	See Comparison
NZ_CP030114.1	See Comparison
NZ_OU342908.1	See Comparison
NZ_CP076695.1	See Comparison
NZ_CP035724.1	See Comparison
NZ_CP035473.1	See Comparison
NZ_LR130566.1	See Comparison
NZ_CP035520.1	See Comparison
NZ_CP035481.1	See Comparison
NZ_CP033851.1	See Comparison
NZ_CP107124.1	See Comparison
NZ_CP082102.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore