Plasmid CP088815.1

Sequence

Nucleotide Information

Accession CP088815.1
Description Escherichia coli strain B16EC0262 plasmid pB16EC0262-3, complete sequence
Source insd
Topology circular
Length 4082 bp
GC Content 0.49 %
Created at NCBI Dec. 9, 2021



Assembly

Genome Data Information

Accession GCF_021133175.1
Assembly Coverage 194


Biosample

Curated Collection Information
Accession 23391557

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.68N;126.77E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.68/126.77
Address Gyeongui-ro, Daehwa-dong, 일산3동, Ilsanseo-gu, Goyang-si, 10374, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_OU342908.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP145687.1 See Comparison
CP054456.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_CP107124.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP053759.1 See Comparison
CP088815.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_KT693144.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP107124.1 See Comparison
CP054456.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_CP124371.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_OR345922.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP033161.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore