Plasmid NZ_CP030114.1

Sequence

Nucleotide Information

Accession NZ_CP030114.1
Description Escherichia coli strain MCJCHV-1 plasmid pNMEC-O75C, complete sequence
Source refseq
Topology circular
Length 4082 bp
GC Content 0.49 %
Created at NCBI July 31, 2018



Assembly

Genome Data Information

Accession GCF_003344465.1
Assembly Coverage 320


Biosample

Curated Collection Information
Accession 9462202

PLASMID INFORMATION
BIOSAMPLE_pathotype Escherichia coli- NMEC

GEOGRAPHICAL INFORMATION
Original Query 36.139416N;86.802280W
Original Query Type coordinates
Coordinates (Lat/Lon) 36.14/-86.80
Address Vanderbilt University, 2201, West End Avenue, Nashville-Davidson, Davidson County, Middle Tennessee, Tennessee, 37235, United States

ECOSYSTEM
Original Query Homo sapiens,CSF
Classification host_associated,nervous_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 30 days
Host-associated Sex female

DISEASE
Original Query Neonatal bacterial meningitis,death
DOID/SYMP
  • Bacterial meningitis (DOID:9470 )
    • A meningitis that has_material_basis_in a bacterial infection.
    • Has_material_basis_in: ['a bacterial infection']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP145687.1 See Comparison
NZ_OR345922.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP051748.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_LR898882.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_OP242296.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_CP076695.1 See Comparison
NZ_CP059124.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP035724.1 See Comparison
NZ_CP035473.1 See Comparison
NZ_CP035520.1 See Comparison
NZ_CP035481.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_CP145687.1 See Comparison
CP054456.1 See Comparison
NZ_LR898882.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP051748.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_OP242296.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_CP059124.1 See Comparison
NZ_CP035724.1 See Comparison
NZ_CP076695.1 See Comparison
NZ_CP035520.1 See Comparison
NZ_CP035481.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP035473.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP030114.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP033161.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP051748.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_OP242296.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_LR898882.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_CP053759.1 See Comparison
CP054456.1 See Comparison
NZ_CP059124.1 See Comparison
NZ_CP076695.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP035473.1 See Comparison
NZ_CP035520.1 See Comparison
NZ_CP035481.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_CP035724.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP051748.1 See Comparison
NZ_LR898882.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_OP242296.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP059124.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_CP076695.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_CP035520.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP035481.1 See Comparison
NZ_CP035724.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP035473.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_OR345922.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP051748.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_LR898882.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OP242296.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP059124.1 See Comparison
NZ_CP076695.1 See Comparison
NZ_CP035724.1 See Comparison
NZ_CP035473.1 See Comparison
NZ_CP035520.1 See Comparison
NZ_CP035481.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_CP145687.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP033161.1 See Comparison
NZ_CP051748.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_LR898882.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_OP242296.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP091709.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_CP035724.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP059124.1 See Comparison
NZ_CP076695.1 See Comparison
NZ_CP035520.1 See Comparison
NZ_CP035481.1 See Comparison
NZ_CP035473.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore