Plasmid NZ_CP035520.1
Sequence
Nucleotide Information
| Accession | NZ_CP035520.1 |
|---|---|
| Description | Escherichia coli strain U14A plasmid pU14A_D, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 8166 bp |
| GC Content | 0.49 % |
| Created at NCBI | Feb. 7, 2019 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 10836813 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA,Utah |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.42/-111.71 |
| Address | USA,Utah |
ECOSYSTEM
| Original Query | Homo sapiens,urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | mobC | copy | ||
| PGAG | mobQ | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | mobC | copy | ||
| MOB-typer | rep_cluster_1778 | copy | ||
| MOB-typer | MOBQ | copy | ||
| MOB-typer | MOBQ | copy | ||
| MOB-typer | MOBQ | copy | ||
| MOB-typer | MOBQ | copy | ||
| MOB-typer | MOBQ | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 12 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 001198__NC_010486_00001 | rep_cluster_1778 | 259 | 962 | minus | 99.716 | 100 | 0 | 1288 |
| replicon | 001198__NC_010486_00001 | rep_cluster_1778 | 4343 | 5044 | minus | 100 | 100 | 0 | 1297 |
| oriT | NC_016036 | MOBQ | 1750 | 1927 | minus | 100 | 100 | 5.61e-88 | 329 |
| relaxase | NC_011411_00002 | MOBQ | 1841 | 4084 | plus | 99.866 | 100 | 0 | 1515 |
| relaxase | NC_011411_00002 | MOBQ | 5923 | 8004 | plus | 99.856 | 100 | 0 | 1400 |
| oriT | NC_010672 | MOBQ | 1927 | 2286 | plus | 100 | 100 | 0 | 665 |
| oriT | NC_016036 | MOBQ | 5832 | 6009 | minus | 100 | 100 | 5.61e-88 | 329 |
| oriT | NC_010672 | MOBQ | 6009 | 6368 | plus | 100 | 100 | 0 | 665 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 8 of 8 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |