Plasmid NZ_LR890408.1

Sequence

Nucleotide Information

Accession NZ_LR890408.1
Description Escherichia coli strain MSB1_7C isolate MSB1_7C plasmid 4, complete sequence
Source refseq
Topology circular
Length 4082 bp
GC Content 0.49 %
Created at NCBI Oct. 30, 2020



Assembly

Genome Data Information

Accession GCF_904864555.1
Assembly Coverage 163


Biosample

Curated Collection Information
Accession 4089319

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query healthy
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP088758.1 See Comparison
NZ_OU342908.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077285.1 See Comparison
CP077253.1 See Comparison
NZ_CP006634.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_CP128259.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_AP022168.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_OW848787.1 See Comparison
CP088758.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OU342908.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077285.1 See Comparison
CP077253.1 See Comparison
NZ_CP006634.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_CP128259.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP145687.1 See Comparison
CP054456.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_LR890408.1 See Comparison
NZ_AP022168.1 See Comparison
CP088758.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_CP006634.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077285.1 See Comparison
CP077253.1 See Comparison
CP054456.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP128259.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_CP006634.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_OW848787.1 See Comparison
CP088758.1 See Comparison
NZ_OU342908.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077285.1 See Comparison
CP077253.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP128259.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_CP082102.1 See Comparison
CP088758.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_OR345922.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_CP006634.1 See Comparison
NZ_OU342908.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077285.1 See Comparison
CP077253.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP128259.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_AP022168.1 See Comparison
CP054456.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OW848787.1 See Comparison
CP088758.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077285.1 See Comparison
CP077253.1 See Comparison
NZ_CP033851.1 See Comparison
NZ_CP006634.1 See Comparison
NZ_LR130566.1 See Comparison
CP054456.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP128259.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_OZ038771.1 See Comparison
NZ_CP145687.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_OR345922.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP074491.1 See Comparison
NZ_CP053759.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore