Plasmid CP030483.1

Sequence

Nucleotide Information

Accession CP030483.1
Description Staphylococcus aureus strain ER03913.3 plasmid unnamed2, complete sequence
Source insd
Topology circular
Length 39649 bp
GC Content 0.29 %
Created at NCBI Oct. 10, 2019



Assembly

Genome Data Information

Accession GCA_008935495.1
Assembly Coverage 340.704


Biosample

Curated Collection Information
Accession 9484030

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.7903114N;73.9528738W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP030483.1 See Comparison


Plasmid Visualization

JSON GENBANK




Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_013653_00017MOBQ1571817712minus91.12810001241
replicon000420__KR230047_00004rep_cluster_11422080621765plus99.79210001762
mate-pair-formationNC_010279_00007MPF_T2470926718plus99.10410001253
mate-pair-formationNC_013653_00035MPF_T3219733816plus96.852990877
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2