Plasmid OW849478.1
Sequence
Nucleotide Information
| Accession | OW849478.1 |
|---|---|
| Description | Enterobacter cloacae isolate 133 genome assembly, plasmid: P4 |
| Source | insd |
| Topology | circular |
| Length | 2511 bp |
| GC Content | 0.52 % |
| Created at NCBI | May 14, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Enterobacter cloacae (550) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Enterobacter (547) |
| Species | Enterobacter_cloacae (550) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22316657 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Spain |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.33/-4.84 |
| Address | Spain |
ECOSYSTEM
| Original Query | Homo sapiens,Hospital Universitario Son de Espases (Palma de Mallorca) |
|---|---|
| Classification | anthropogenic,hospital,host_associated,location |
| Host-associated Taxon |
|
DISEASE
| Original Query | diseased |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
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Sequence
- Accession: OW849182.1
- Description: Enterobacter cloacae isolate 133 genome assembly, plasmid: P4
- Source: insd
- Created at NCBI: May 14, 2022
-
Host Taxonomy
Assigned Host: Enterobacter cloacae (550)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Enterobacter (547)
- Species : Enterobacter_cloacae (550)
- Strain:
-
Biosample
Accession: 22316655 - GEOGRAPHICAL INFORMATION
- Original Query: Spain
- Original Query Type: name
- Address: Spain
- Coordinates (Lat/Lon): 39.33/-4.84
- ECOSYSTEM
- Original Query: Homo sapiens,Hospital Universitario Son de Espases (Palma de Mallorca)
- Classification: anthropogenic,hospital,host_associated,location
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: diseased
- DOID/SYMP:
- Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
Plasmid Visualization
Grays
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Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Regulatory protein rop | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | rep_cluster_2335 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 5 of 5 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | KU302809_00001 | rep_cluster_2335 | 516 | 1077 | minus | 88.339 | 91 | 0 | 662 |
| oriT | NC_019094 | MOB_unknown | 1715 | 1795 | plus | 100 | 100 | 1.67e-34 | 150 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |