Plasmid CP082687.1

Sequence

Nucleotide Information

Accession	CP082687.1
Description	Salmonella enterica subsp. enterica serovar Bredeney strain CVM N18S0406 plasmid pN18S0406-6, complete sequence
Source	insd
Topology	circular
Length	2511 bp
GC Content	0.52 %
Created at NCBI	Aug. 31, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (134047)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCA_006338875.2
Assembly Coverage	313

Biosample

Curated Collection Information

Accession	11967990

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA,MD
Original Query Type	name
Coordinates (Lat/Lon)	39.52/-76.94
Address	USA,MD

ECOSYSTEM

Original Query	ground turkey
Classification	food,meat
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_OV754006.1	See Comparison
NZ_OV753642.1	See Comparison
NZ_CP103498.1	See Comparison
NZ_AP025858.1	See Comparison
NZ_AP025922.1	See Comparison
NZ_AP025882.1	See Comparison
NZ_AP025902.1	See Comparison
NZ_AP025935.1	See Comparison
NZ_AP025874.1	See Comparison
NZ_AP025866.1	See Comparison
NZ_AP025854.1	See Comparison
NZ_AP025894.1	See Comparison
NZ_AP025870.1	See Comparison
NZ_AP025914.1	See Comparison
NZ_AP025850.1	See Comparison
NZ_AP025930.1	See Comparison
NZ_AP025886.1	See Comparison
NZ_AP025910.1	See Comparison
NZ_AP025926.1	See Comparison
NZ_AP025890.1	See Comparison
NZ_AP025862.1	See Comparison
NZ_AP025906.1	See Comparison
NZ_AP025918.1	See Comparison
NZ_AP025878.1	See Comparison
NZ_AP025898.1	See Comparison
OW968230.1	See Comparison
OW968143.1	See Comparison
OW968091.1	See Comparison
OW967948.1	See Comparison
OW849535.1	See Comparison
OW849478.1	See Comparison
OW849182.1	See Comparison
NZ_CP072948.1	See Comparison
NZ_CP115008.1	See Comparison
NZ_CP042555.1	See Comparison
NZ_CP135513.1	See Comparison
NZ_CP135120.1	See Comparison
NZ_AP022512.1	See Comparison
AP028484.1	See Comparison
NZ_CP058156.1	See Comparison
NZ_CP058163.1	See Comparison
NZ_CP051136.1	See Comparison
NZ_MT560071.1	See Comparison
NZ_AP025894.1	See Comparison
NZ_OV754006.1	See Comparison
NZ_OV753642.1	See Comparison
NZ_AP025858.1	See Comparison
NZ_AP025922.1	See Comparison
NZ_CP103498.1	See Comparison
NZ_AP025870.1	See Comparison
NZ_AP025882.1	See Comparison
NZ_AP025902.1	See Comparison
NZ_AP025914.1	See Comparison
NZ_AP025850.1	See Comparison
NZ_AP025935.1	See Comparison
NZ_AP025874.1	See Comparison
NZ_AP025930.1	See Comparison
NZ_AP025866.1	See Comparison
NZ_AP025886.1	See Comparison
NZ_AP025910.1	See Comparison
NZ_AP025926.1	See Comparison
NZ_AP025854.1	See Comparison
NZ_AP025890.1	See Comparison
NZ_AP025862.1	See Comparison
NZ_AP025906.1	See Comparison
NZ_AP025918.1	See Comparison
NZ_AP025878.1	See Comparison
NZ_AP025898.1	See Comparison
NZ_CP072948.1	See Comparison
OW968091.1	See Comparison
OW849535.1	See Comparison
OW849478.1	See Comparison
OW849182.1	See Comparison
OW968230.1	See Comparison
OW968143.1	See Comparison
OW967948.1	See Comparison
NZ_CP042555.1	See Comparison
NZ_CP115008.1	See Comparison
NZ_CP135513.1	See Comparison
NZ_CP135120.1	See Comparison
NZ_CP058156.1	See Comparison
AP028484.1	See Comparison
NZ_CP058163.1	See Comparison
NZ_MT560071.1	See Comparison
NZ_AP022512.1	See Comparison
NZ_CP051136.1	See Comparison
NZ_AP025914.1	See Comparison
NZ_OV754006.1	See Comparison
NZ_OV753642.1	See Comparison
NZ_CP103498.1	See Comparison
NZ_AP025850.1	See Comparison
NZ_AP025930.1	See Comparison
NZ_AP025886.1	See Comparison
NZ_AP025910.1	See Comparison
NZ_AP025858.1	See Comparison
NZ_AP025926.1	See Comparison
NZ_AP025922.1	See Comparison
NZ_AP025882.1	See Comparison
NZ_AP025890.1	See Comparison
NZ_AP025862.1	See Comparison
NZ_AP025902.1	See Comparison
NZ_AP025906.1	See Comparison
NZ_AP025935.1	See Comparison
NZ_AP025874.1	See Comparison
NZ_AP025918.1	See Comparison
NZ_AP025866.1	See Comparison
NZ_AP025878.1	See Comparison
NZ_AP025854.1	See Comparison
NZ_AP025898.1	See Comparison
OW849182.1	See Comparison
NZ_AP025894.1	See Comparison
NZ_AP025870.1	See Comparison
OW968091.1	See Comparison
OW849478.1	See Comparison
OW968230.1	See Comparison
OW968143.1	See Comparison
OW967948.1	See Comparison
OW849535.1	See Comparison
NZ_CP042555.1	See Comparison
NZ_CP072948.1	See Comparison
NZ_CP051136.1	See Comparison
NZ_CP058156.1	See Comparison
NZ_CP058163.1	See Comparison
NZ_CP135513.1	See Comparison
NZ_CP135120.1	See Comparison
NZ_CP115008.1	See Comparison
AP028484.1	See Comparison
NZ_AP022512.1	See Comparison
NZ_MT560071.1	See Comparison
OW967948.1	See Comparison
NZ_CP103498.1	See Comparison
NZ_AP025858.1	See Comparison
NZ_AP025922.1	See Comparison
NZ_AP025882.1	See Comparison
NZ_AP025902.1	See Comparison
NZ_AP025935.1	See Comparison
NZ_AP025874.1	See Comparison
NZ_AP025866.1	See Comparison
NZ_AP025854.1	See Comparison
NZ_AP025894.1	See Comparison
NZ_AP025870.1	See Comparison
NZ_AP025914.1	See Comparison
NZ_AP025850.1	See Comparison
NZ_AP025930.1	See Comparison
NZ_AP025886.1	See Comparison
NZ_AP025910.1	See Comparison
NZ_AP025926.1	See Comparison
NZ_AP025890.1	See Comparison
NZ_AP025862.1	See Comparison
NZ_AP025906.1	See Comparison
NZ_AP025918.1	See Comparison
NZ_AP025878.1	See Comparison
NZ_AP025898.1	See Comparison
OW968230.1	See Comparison
OW968143.1	See Comparison
NZ_OV754006.1	See Comparison
NZ_OV753642.1	See Comparison
OW968091.1	See Comparison
OW849535.1	See Comparison
OW849182.1	See Comparison
OW849478.1	See Comparison
CP082687.1	See Comparison
NZ_CP072948.1	See Comparison
NZ_OV753642.1	See Comparison
NZ_CP042555.1	See Comparison
NZ_CP135513.1	See Comparison
NZ_CP115008.1	See Comparison
AP028484.1	See Comparison
NZ_CP058156.1	See Comparison
NZ_CP058163.1	See Comparison
NZ_MT560071.1	See Comparison
NZ_OV754006.1	See Comparison
NZ_CP135120.1	See Comparison
NZ_CP051136.1	See Comparison
NZ_AP022512.1	See Comparison
OW849535.1	See Comparison
NZ_AP025858.1	See Comparison
NZ_AP025922.1	See Comparison
NZ_AP025882.1	See Comparison
NZ_AP025902.1	See Comparison
NZ_AP025935.1	See Comparison
NZ_AP025874.1	See Comparison
NZ_AP025866.1	See Comparison
NZ_AP025854.1	See Comparison
NZ_AP025894.1	See Comparison
NZ_AP025870.1	See Comparison
NZ_AP025914.1	See Comparison
NZ_AP025850.1	See Comparison
NZ_AP025930.1	See Comparison
NZ_AP025886.1	See Comparison
NZ_AP025910.1	See Comparison
NZ_AP025926.1	See Comparison
NZ_AP025890.1	See Comparison
NZ_AP025862.1	See Comparison
NZ_AP025906.1	See Comparison
NZ_AP025918.1	See Comparison
NZ_AP025878.1	See Comparison
NZ_AP025898.1	See Comparison
OW967948.1	See Comparison
NZ_CP103498.1	See Comparison
OW968230.1	See Comparison
OW968143.1	See Comparison
OW968091.1	See Comparison
OW849182.1	See Comparison
OW849478.1	See Comparison
NZ_CP072948.1	See Comparison
AP028484.1	See Comparison
NZ_CP042555.1	See Comparison
NZ_CP115008.1	See Comparison
NZ_CP135513.1	See Comparison
NZ_CP135120.1	See Comparison
OW968230.1	See Comparison
NZ_CP051136.1	See Comparison
NZ_AP022512.1	See Comparison
NZ_CP058156.1	See Comparison
NZ_CP058163.1	See Comparison
NZ_MT560071.1	See Comparison
NZ_OV754006.1	See Comparison
NZ_OV753642.1	See Comparison
NZ_CP103498.1	See Comparison
NZ_AP025858.1	See Comparison
NZ_AP025922.1	See Comparison
NZ_AP025882.1	See Comparison
NZ_AP025902.1	See Comparison
NZ_AP025935.1	See Comparison
NZ_AP025874.1	See Comparison
NZ_AP025866.1	See Comparison
NZ_AP025854.1	See Comparison
NZ_AP025894.1	See Comparison
NZ_AP025870.1	See Comparison
NZ_AP025914.1	See Comparison
NZ_AP025850.1	See Comparison
NZ_AP025930.1	See Comparison
NZ_AP025886.1	See Comparison
NZ_AP025910.1	See Comparison
NZ_AP025926.1	See Comparison
NZ_AP025890.1	See Comparison
NZ_AP025862.1	See Comparison
NZ_AP025906.1	See Comparison
NZ_AP025918.1	See Comparison
NZ_AP025878.1	See Comparison
NZ_AP025898.1	See Comparison
OW968143.1	See Comparison
OW968091.1	See Comparison
OW849478.1	See Comparison
OW967948.1	See Comparison
NZ_CP072948.1	See Comparison
OW849182.1	See Comparison
OW849535.1	See Comparison
NZ_CP135513.1	See Comparison
NZ_CP042555.1	See Comparison
NZ_CP135120.1	See Comparison
NZ_CP115008.1	See Comparison
AP028484.1	See Comparison
NZ_OV754006.1	See Comparison
NZ_CP058156.1	See Comparison
NZ_CP058163.1	See Comparison
NZ_CP051136.1	See Comparison
NZ_AP022512.1	See Comparison
NZ_MT560071.1	See Comparison
NZ_OV753642.1	See Comparison
NZ_AP025858.1	See Comparison
NZ_CP103498.1	See Comparison
NZ_AP025922.1	See Comparison
NZ_AP025882.1	See Comparison
NZ_AP025902.1	See Comparison
NZ_AP025935.1	See Comparison
NZ_AP025874.1	See Comparison
NZ_AP025866.1	See Comparison
NZ_AP025854.1	See Comparison
NZ_AP025894.1	See Comparison
NZ_AP025870.1	See Comparison
NZ_AP025914.1	See Comparison
NZ_AP025850.1	See Comparison
NZ_AP025930.1	See Comparison
NZ_AP025886.1	See Comparison
NZ_AP025910.1	See Comparison
NZ_AP025926.1	See Comparison
NZ_AP025890.1	See Comparison
NZ_AP025862.1	See Comparison
NZ_AP025906.1	See Comparison
NZ_AP025918.1	See Comparison
NZ_AP025878.1	See Comparison
NZ_AP025898.1	See Comparison
OW967948.1	See Comparison
OW968230.1	See Comparison
OW968143.1	See Comparison
OW968091.1	See Comparison
OW849182.1	See Comparison
OW849478.1	See Comparison
OW849535.1	See Comparison
NZ_CP072948.1	See Comparison
NZ_CP135513.1	See Comparison
NZ_CP042555.1	See Comparison
NZ_CP135120.1	See Comparison
NZ_CP115008.1	See Comparison
AP028484.1	See Comparison
NZ_MT560071.1	See Comparison
NZ_CP051136.1	See Comparison
NZ_AP022512.1	See Comparison
NZ_CP058156.1	See Comparison
NZ_CP058163.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2