Plasmid NZ_CP051136.1
Sequence
Nucleotide Information
| Accession | NZ_CP051136.1 |
|---|---|
| Description | Enterobacter hormaechei strain AMS-38 plasmid pAMS-38d, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 2511 bp |
| GC Content | 0.52 % |
| Created at NCBI | April 22, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Enterobacter hormaechei (158836) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Enterobacter (547) |
| Species | Enterobacter_hormaechei (158836) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14492121 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Egypt,Cairo |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 30.05/31.24 |
| Address | Egypt,Cairo |
ECOSYSTEM
| Original Query | Homo sapiens,cell culture,clinical |
|---|---|
| Classification | anthropogenic,cell_culture,hospital,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | YgdI/YgdR family lipoprotein | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | rep_cluster_2335 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 5 of 5 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | KU302809_00001 | rep_cluster_2335 | 554 | 1115 | plus | 88.339 | 91 | 0 | 662 |
| oriT | NC_019094 | MOB_unknown | 2347 | 2427 | minus | 100 | 100 | 1.67e-34 | 150 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |