Plasmid NZ_OW968012.1

Sequence

Nucleotide Information

Accession NZ_OW968012.1
Description Escherichia coli isolate 58 plasmid P1, complete sequence
Source refseq
Topology circular
Length 154854 bp
GC Content 0.52 %
Created at NCBI May 19, 2022



Assembly

Genome Data Information

Accession GCF_905332395.2
Assembly Coverage 389


Biosample

Curated Collection Information
Accession 22316830

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario Ramon y Cajal (Madrid)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP057274.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP062858.1 See Comparison
CP063726.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
CP057274.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_CP062858.1 See Comparison
NZ_KP398867.1 See Comparison
CP063726.1 See Comparison
NZ_CP062858.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_KP398867.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
CP057274.1 See Comparison
CP063726.1 See Comparison
NZ_CP093319.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP062858.1 See Comparison
NZ_KP398867.1 See Comparison
CP057274.1 See Comparison
CP063726.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_CP026940.2 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
CP057274.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP062858.1 See Comparison
CP063726.1 See Comparison
CP099122.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_CP095535.1 See Comparison
CP063726.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
CP057274.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_CP062858.1 See Comparison
NZ_CP018994.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP014489.1 See Comparison
NZ_KP398867.1 See Comparison
CP057274.1 See Comparison
NZ_OY754399.1 See Comparison
CP063726.1 See Comparison
NZ_CP062858.1 See Comparison
NZ_CP095535.1 See Comparison
CP099122.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP093319.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_CP018994.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussul2copy
amrfinderplustet(A)copy
amrfinderplusaph(6)-Idcopy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusdfrA5copy
amrfinderplusiucBcopy
amrfinderplusiucCcopy
amrfinderplusiroNcopy
amrfinderplusiucAcopy
amrfinderplusisscopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 158 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
AB011549.2amrfinderplus2024-01-31.1katPcatalase/peroxidase KatP7688879095-1+100.0100.0
AB011549.2amrfinderplus2024-01-31.1espPserine protease autotransporter EspP8075784656-1+100.0100.0
AB011549.2amrfinderplus2024-01-31.1ehxAenterohemolysin EhxA1661219605-1+100.0100.0
AB011549.2amrfinderplus2024-01-31.1toxBtoxin B5598165487-1+100.0100.0
AB576781.2amrfinderplus2024-01-31.1blaTEM-1broad-spectrum class A beta-lactamase TEM-1BETA-LACTAMBETA-LACTAM2858729444-1-100.0100.0
AB576781.2rgi3.2.9aadAANT(3'')aminoglycoside antibiotic1735218131-1-99.6198.48
AB576781.2amrfinderplus2024-01-31.1sul1sulfonamide-resistant dihydropteroate synthase Sul1SULFONAMIDESULFONAMIDE1601116847-1-100.0100.0
AB576781.2amrfinderplus2024-01-31.1aadA1ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1AMINOGLYCOSIDESTREPTOMYCIN1735518143-1-100.0100.0
AB576781.2amrfinderplus2024-01-31.1tet(A)tetracycline efflux MFS transporter Tet(A)TETRACYCLINETETRACYCLINE971210908-1-100.0100.0
AB576781.2amrfinderplus2024-01-31.1spvDSPI-2 type III secretion system effector cysteine hydrolase SpvD4215442801-1-100.0100.0
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Showing 1 to 10 of 250,691 entries (filtered from 251,138 total entries)
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Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
AB000510.1non-mobilizableAD045AM462Candidatus Phytoplasma0.0
AB011548.2rep_cluster_2350MOBFMOB_unknownmobilizableAA667AI941Actinomycetota,Bacillota,Bacteroidota,Pseudomonadota0.0genus
AB011549.2IncFIA,IncFIBnon-mobilizableAA345AI296Enterobacterales0.0order
AB063523.1rep_cluster_1526non-mobilizableAE201AN929Wigglesworthia0.0
AB244976.1rep_cluster_1617MOBPMPF_TMOBQconjugativeAC441AL633Sphingomonadaceae0.00940624
AB576781.2IncFIIMOBFMPF_FconjugativeAB460AK247Enterobacterales0.0family
AB605179.1IncFIB,IncFIIMOBFMPF_FconjugativeAB460AK247Enterobacterales0.0order
ADWM02000138.1non-mobilizableAF844AP846Neisseria0.00058191
ADWN02000004.1non-mobilizableAF844AP846Neisseria0.00058191
AE006471.2IncFIB,IncFIIMOBFMPF_FconjugativeAB460AK247Enterobacterales0.0order
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Showing 1 to 10 of 72,360 entries (filtered from 72,556 total entries)
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BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000095__NZ_CP014273_00094IncFIB1978plus98.56910001729
replicon000195__NC_013728_00014IncQ16931170195minus10010001635
replicon000136__AP014877_00014IncFIA8101581872minus96.15410001402
repliconAY458016IncFIC8187082130plus1001006.309999999999996e-134483
relaxaseNC_017627_00068MOBF8695092217minus97.89310003359
mate-pair-formation08-5333_00200MPF_Unknown9222094370minus97.15410001469
mate-pair-formationNC_009837_00049MPF_F9587798855minus93.85710001873
mate-pair-formationNC_009837_00049MPF_F98855100069minus98.7651000783
mate-pair-formationNC_010488_00021MPF_F102682104487minus99.16910001179
mate-pair-formationNC_018966_00040MPF_F104487105077minus99.492931.23e-128405
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 19 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
AB011548.2ColRNAI87.02100.026752805plusEnterobacterialesenterobacteriales
AB011549.2IncFII96.1799.237230072558plusEnterobacterialesenterobacteriales
AB011549.2IncFIB(AP001918)98.24100.02571626397plusEnterobacterialesenterobacteriales
AB576781.2IncFII(S)100.0100.0111401111662plusEnterobacterialesenterobacteriales
AB576781.2IncFII(pAR0022)85.2998.42111685112119plusEnterobacterialesenterobacteriales
AB605179.1IncFII(S)100.0100.0131573131834plusEnterobacterialesenterobacteriales
AB605179.1IncFIB(AP001918)98.39100.02053421215plusEnterobacterialesenterobacteriales
AB605179.1IncFII(pAR0022)85.2998.42131857132291plusEnterobacterialesenterobacteriales
AE006471.2IncFIB(S)100.0100.01701117653plusEnterobacterialesenterobacteriales
AE006471.2IncFII(S)100.0100.016651926plusEnterobacterialesenterobacteriales
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Showing 1 to 10 of 60,619 entries
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