Plasmid NZ_CP093319.1

Sequence

Nucleotide Information

Accession NZ_CP093319.1
Description Escherichia coli strain HUM3355 plasmid pHUM3355_B, complete sequence
Source refseq
Topology circular
Length 155161 bp
GC Content 0.51 %
Created at NCBI Oct. 23, 2022



Assembly

Genome Data Information

Accession GCF_025782825.1
Assembly Coverage 100


Biosample

Curated Collection Information

Accession 26232716

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 17.80140275S;25.14948760E
Original Query Type coordinates
Coordinates (Lat/Lon) -17.80/25.15
Address Kasane Primary Hospital, President Avenue, Police House quarters, Kasane, Chobe District, Botswana

ECOSYSTEM
Original Query Homo sapiens,faecal sample
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diarrhea
DOID/SYMP
  • Diarrhea (DOID:13250 )
  • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP095535.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP071442.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_KP398867.1 See Comparison
CP063726.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP071442.1 See Comparison
CP063726.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP071442.1 See Comparison
CP063726.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_KP398867.1 See Comparison
CP063726.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP071442.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP071442.1 See Comparison
CP063726.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_CP122619.1 See Comparison
CP063726.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP071442.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore