Plasmid CP057274.1

Sequence

Nucleotide Information

Accession CP057274.1
Description Escherichia coli strain RHB31-C02 plasmid pRHB31-C02_2, complete sequence
Source insd
Topology circular
Length 149783 bp
GC Content 0.51 %
Created at NCBI July 28, 2020



Assembly

Genome Data Information

Accession GCA_013822435.1
Assembly Coverage 153.299


Biosample

Curated Collection Information
Accession 15148300

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled cattle faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP122619.1 See Comparison
NZ_OZ040193.1 See Comparison
CP057193.1 See Comparison
CP057274.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP053282.1 See Comparison
NZ_CP062858.1 See Comparison
CP099122.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
CP057193.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP062858.1 See Comparison
CP099122.1 See Comparison
NZ_CP053282.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP053282.1 See Comparison
NZ_OZ040193.1 See Comparison
CP057193.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP062858.1 See Comparison
NZ_MW228449.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
CP057193.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP053282.1 See Comparison
NZ_CP062858.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
CP057193.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP053282.1 See Comparison
NZ_CP062858.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
CP057193.1 See Comparison
NZ_CP062858.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP053282.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_CP014489.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore