Plasmid NZ_CP026940.2

Sequence

Nucleotide Information

Accession NZ_CP026940.2
Description Escherichia coli strain CFS3313 plasmid pCFS3313-1, complete sequence
Source refseq
Topology circular
Length 155171 bp
GC Content 0.51 %
Created at NCBI Jan. 16, 2020



Assembly

Genome Data Information

Accession GCF_009867035.2
Assembly Coverage 30


Biosample

Curated Collection Information
Accession 8522770

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query France
Original Query Type name
Coordinates (Lat/Lon) 46.60/1.89
Address France

ECOSYSTEM
Original Query Bos taurus,Cell Culture,Bovine adult
Classification cell_culture,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
CP063726.1 See Comparison
NZ_CP071442.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP071442.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_OW968012.1 See Comparison
CP063726.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP071442.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
CP063726.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_CP093319.1 See Comparison
CP063726.1 See Comparison
NZ_CP071442.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP093319.1 See Comparison
CP063726.1 See Comparison
NZ_CP071442.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
CP063726.1 See Comparison
NZ_CP071442.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP018994.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_OW968012.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP012636.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore