Plasmid NZ_ON390812.1
Sequence
Nucleotide Information
| Accession | NZ_ON390812.1 |
|---|---|
| Description | Escherichia coli strain TQ2 plasmid pTQ2-tet(X4), complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 198381 bp |
| GC Content | 0.46 % |
| Created at NCBI | Oct. 3, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | floR | copy | ||
| amrfinderplus | tet(X4) | copy | ||
| amrfinderplus | aadA22 | copy | ||
| amrfinderplus | lnu(G) | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| rgi | lnuG | copy | ||
| rgi | aadA23 | copy | ||
| PGAG | ParA family protein | copy | ||
| PGAG | ParB family protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 223 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_013365_00169 | MOBH | 120163 | 123195 | plus | 99.703 | 100 | 0 | 2022 |
| mate-pair-formation | NC_019360_00278 | MPF_F | 13206 | 14711 | plus | 90.637 | 100 | 0 | 950 |
| mate-pair-formation | NC_005211_00030 | MPF_F | 14859 | 15905 | plus | 95.989 | 99 | 0 | 710 |
| mate-pair-formation | NC_002305_00127 | MPF_F | 113815 | 115227 | minus | 100 | 100 | 0 | 966 |
| mate-pair-formation | NC_002305_00120 | MPF_F | 123198 | 125279 | plus | 99.856 | 100 | 0 | 1450 |
| mate-pair-formation | NC_019360_00255 | MPF_F | 184978 | 185760 | plus | 93.487 | 100 | 2.81e-155 | 484 |
| mate-pair-formation | NC_019360_00256 | MPF_F | 185766 | 186995 | plus | 94.903 | 100 | 0 | 765 |
| mate-pair-formation | NC_009981_00239 | MPF_T | 191136 | 193814 | plus | 99.888 | 100 | 0 | 1802 |
| replicon | AF250878 | IncFIA | 45472 | 45859 | plus | 100 | 100 | 0 | 717 |
| replicon | AY033516_00007 | rep_cluster_2327 | 76843 | 77462 | plus | 84.615 | 99 | 1.99e-167 | 595 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |