Plasmid NZ_CP046717.1

Sequence

Nucleotide Information

Accession NZ_CP046717.1
Description Escherichia coli strain T16R plasmid pT16R-1, complete sequence
Source refseq
Topology circular
Length 190391 bp
GC Content 0.46 %
Created at NCBI March 21, 2020



Assembly

Genome Data Information

Accession GCF_011492985.1
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 13530296

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Henan
Original Query Type name
Coordinates (Lat/Lon) 34.00/114.00
Address China,Henan

ECOSYSTEM
Original Query pet dog,faecal sample
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP116047.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
CP101801.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_CP071877.1 See Comparison
CP090284.1 See Comparison
NZ_MZ773210.1 See Comparison
CP130474.1 See Comparison
NZ_CP072517.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_OR509737.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_CP116047.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
CP101801.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_CP071877.1 See Comparison
CP090284.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_CP072517.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_OR509737.1 See Comparison
CP130474.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_CP116047.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
CP101801.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_CP071877.1 See Comparison
CP090284.1 See Comparison
NZ_CP072517.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_OR509737.1 See Comparison
CP130474.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_CP116047.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
CP101801.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_CP071877.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_CP072517.1 See Comparison
CP090284.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_OR509737.1 See Comparison
NZ_CP139495.1 See Comparison
CP130474.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_CP089511.1 See Comparison
CP101801.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_CP116047.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
NZ_OR509737.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_CP071877.1 See Comparison
CP090284.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_CP072517.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_CP046717.1 See Comparison
NZ_CP116047.1 See Comparison
CP130474.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP046007.1 See Comparison
CP101801.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_CP072517.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_CP071877.1 See Comparison
CP090284.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_OR509737.1 See Comparison
CP130474.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_CP049354.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore