Plasmid CP130474.1

Sequence

Nucleotide Information

Accession CP130474.1
Description Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain JS-19S230 plasmid pJS-19S230, complete sequence
Source insd
Topology circular
Length 190711 bp
GC Content 0.46 %
Created at NCBI May 20, 2024



Biosample

Curated Collection Information
Accession 36471213

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 34N;117E
Original Query Type coordinates
Coordinates (Lat/Lon) 34.00/117.00
Address 京台高速, 庄里镇, Xiao County, Suzhou, Anhui, China

ECOSYSTEM
Original Query Homo sapiens,faces
Classification host_associated,skin
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Salmonella gastroenteritis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

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NZ_CP041449.1 See Comparison
NZ_OR509737.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_CP046717.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP116047.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_ON934554.1 See Comparison
CP101801.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
NZ_OR509737.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_CP071877.1 See Comparison
NZ_CP072517.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_MW439255.1 See Comparison
CP090284.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_CP046717.1 See Comparison
NZ_CP116047.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
CP101801.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_MW940615.1 See Comparison
CP090284.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_CP071877.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_CP072517.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_OR509737.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_CP046717.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_CP116047.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
CP101801.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_CP071877.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_CP072517.1 See Comparison
CP090284.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_OR509737.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP046717.1 See Comparison
NZ_CP116047.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_CP071877.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
CP101801.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_CP096833.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_CP072517.1 See Comparison
CP090284.1 See Comparison
NZ_MW940625.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP041449.1 See Comparison
NZ_CP139495.1 See Comparison
NZ_OR509737.1 See Comparison
NZ_CP059284.1 See Comparison
NZ_CP139338.1 See Comparison
NZ_CP139340.1 See Comparison
NZ_ON934554.1 See Comparison
NZ_MN101856.1 See Comparison
NZ_CP049354.1 See Comparison
NZ_CP046717.1 See Comparison
NZ_CP046007.1 See Comparison
NZ_CP116047.1 See Comparison
NZ_ON390820.1 See Comparison
NZ_ON390816.1 See Comparison
NZ_ON390812.1 See Comparison
CP101801.1 See Comparison
NZ_CP095844.1 See Comparison
NZ_CP089511.1 See Comparison
NZ_MW439255.1 See Comparison
NZ_CP096833.1 See Comparison
CP090284.1 See Comparison
NZ_CP071877.1 See Comparison
NZ_MZ773210.1 See Comparison
NZ_MW940627.1 See Comparison
NZ_CP072517.1 See Comparison
NZ_MW940615.1 See Comparison
NZ_MW940625.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore