Plasmid NZ_CP096833.1
Sequence
Nucleotide Information
| Accession | NZ_CP096833.1 |
|---|---|
| Description | Escherichia coli strain PM4-5 plasmid pPM4-5-tetX4, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 190632 bp |
| GC Content | 0.46 % |
| Created at NCBI | May 11, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 27593794 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 32.15N;119.01E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 32.15/119.01 |
| Address | 站前路, Qixia, Qixia District, Nanjing City, Jiangsu, China |
ECOSYSTEM
| Original Query | cecum |
|---|---|
| Classification | cecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaTEM-1 | copy | ||
| rgi | lnuG | copy | ||
| rgi | aadA23 | copy | ||
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | tet(X4) | copy | ||
| amrfinderplus | lnu(G) | copy | ||
| amrfinderplus | aadA22 | copy | ||
| amrfinderplus | floR | copy | ||
| PGAG | ParA family protein | copy | ||
| PGAG | ParB family protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 206 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | AF250878 | IncFIA | 45472 | 45859 | plus | 100 | 100 | 0 | 717 |
| replicon | AF250878 | IncHI1B | 156835 | 157374 | minus | 100 | 100 | 0 | 998 |
| replicon | AF250878 | IncHI1A | 174556 | 174975 | plus | 100 | 100 | 0 | 776 |
| relaxase | NC_013365_00169 | MOBH | 115019 | 118051 | plus | 99.703 | 100 | 0 | 2022 |
| mate-pair-formation | NC_019360_00278 | MPF_F | 13206 | 14711 | plus | 90.637 | 100 | 0 | 950 |
| mate-pair-formation | NC_005211_00030 | MPF_F | 14859 | 15905 | plus | 95.989 | 99 | 0 | 710 |
| mate-pair-formation | NC_002305_00127 | MPF_F | 108671 | 110083 | minus | 100 | 100 | 0 | 966 |
| mate-pair-formation | NC_002305_00120 | MPF_F | 118054 | 120135 | plus | 99.856 | 100 | 0 | 1450 |
| mate-pair-formation | NC_019360_00255 | MPF_F | 177285 | 178067 | plus | 93.487 | 100 | 2.81e-155 | 484 |
| mate-pair-formation | NC_019360_00256 | MPF_F | 178073 | 179302 | plus | 94.903 | 100 | 0 | 765 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |