Plasmid NZ_MK416154.1
Sequence
Nucleotide Information
| Accession | NZ_MK416154.1 |
|---|---|
| Description | Escherichia coli strain AR24.2b plasmid pAN-OXA-181, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 51479 bp |
| GC Content | 0.46 % |
| Created at NCBI | June 3, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14229079 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Switzerland |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 46.80/8.23 |
| Address | Switzerland |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaOXA-181 | copy | ||
| amrfinderplus | qnrS1 | copy | ||
| PGAG | ISKra4-like element ISKpn19 family transposase | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-181 | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | S24 family peptidase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | ISL3-like element ISKox3 family transposase | copy | ||
| PGAG | recombinase family protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 68 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000483__CP010949_00006 | rep_cluster_1195 | 1320 | 2207 | minus | 82.123 | 94 | 0 | 754 |
| mate-pair-formation | NC_023277_00163 | MPF_T | 24673 | 26823 | plus | 90.098 | 100 | 0 | 1335 |
| mate-pair-formation | NC_019157_00029 | MPF_T | 27885 | 28937 | plus | 99.715 | 100 | 0 | 641 |
| mate-pair-formation | NC_019157_00030 | MPF_T | 29135 | 29860 | plus | 100 | 100 | 1.21e-145 | 456 |
| mate-pair-formation | NC_019083_00030 | MPF_T | 29869 | 30795 | plus | 98.706 | 100 | 0 | 630 |
| mate-pair-formation | NC_017624_00009 | MPF_T | 33242 | 35038 | plus | 95.159 | 98 | 0 | 1123 |
| replicon | 000221__NC_025130_00012 | IncX3 | 14764 | 15636 | minus | 100 | 100 | 0 | 1613 |
| relaxase | NC_020552_00059 | MOBP | 20875 | 22032 | plus | 100 | 100 | 0 | 757 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 8 of 8 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |