Plasmid CP090300.1
Sequence
Nucleotide Information
| Accession | CP090300.1 |
|---|---|
| Description | Escherichia coli strain E-T951-1 plasmid pE-T951-1-OXA-181, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 53824 bp |
| GC Content | 0.47 % |
| Created at NCBI | Jan. 10, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 24394441 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 34.41/86.03 |
| Address | China |
ECOSYSTEM
| Original Query | Homo sapiens,anal swab specimens |
|---|---|
| Classification | gastrointestinal_system,host_associated,rectal |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaOXA-181 | copy | ||
| amrfinderplus | qnrS1 | copy | ||
| PGAG | cag pathogenicity island Cag12 family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | thermonuclease family protein | copy | ||
| PGAG | ATP-binding protein | copy | ||
| PGAG | topB | copy | ||
| PGAG | H-NS histone family protein | copy | ||
| PGAG | YkgJ family cysteine cluster protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 71 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_023277_00163 | MPF_T | 43186 | 45336 | plus | 90.098 | 100 | 0 | 1335 |
| mate-pair-formation | NC_019157_00029 | MPF_T | 46398 | 47450 | plus | 99.715 | 100 | 0 | 641 |
| mate-pair-formation | NC_019157_00030 | MPF_T | 47648 | 48373 | plus | 100 | 100 | 1.21e-145 | 456 |
| mate-pair-formation | NC_019083_00030 | MPF_T | 48382 | 49308 | plus | 98.706 | 100 | 0 | 630 |
| mate-pair-formation | NC_017624_00009 | MPF_T | 51755 | 53551 | plus | 95.159 | 98 | 0 | 1123 |
| replicon | 000483__CP010949_00006 | rep_cluster_1195 | 17488 | 18375 | minus | 82.123 | 94 | 0 | 754 |
| replicon | 000221__NC_025130_00012 | IncX3 | 30932 | 31804 | minus | 100 | 100 | 0 | 1613 |
| relaxase | CP042516_00001 | MOBV | 37757 | 38731 | plus | 95.077 | 96 | 0 | 591 |
| relaxase | NC_020552_00059 | MOBP | 39388 | 40545 | plus | 100 | 100 | 0 | 757 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 9 of 9 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |