Plasmid NZ_CP058945.1
Sequence
Nucleotide Information
| Accession | NZ_CP058945.1 |
|---|---|
| Description | Klebsiella pneumoniae strain BA39649 plasmid pColKP3_IncX3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 50126 bp |
| GC Content | 0.46 % |
| Created at NCBI | July 13, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14402321 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 12.9246N;79.1348E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 12.92/79.13 |
| Address | Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India |
ECOSYSTEM
| Original Query | Homo sapiens,blood |
|---|---|
| Classification | blood,circulatory_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | Bacteremia |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaOXA-181 | copy | ||
| rgi | QnrS4 | copy | ||
| PGAG | division plane positioning ATPase MipZ | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | ddp1 | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | DnaJ domain-containing protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 67 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_023277_00163 | MPF_T | 12292 | 14442 | plus | 89.958 | 100 | 0 | 1330 |
| mate-pair-formation | NC_019157_00029 | MPF_T | 15504 | 16556 | plus | 99.715 | 100 | 0 | 641 |
| mate-pair-formation | NC_019157_00030 | MPF_T | 16754 | 17479 | plus | 100 | 100 | 1.21e-145 | 456 |
| mate-pair-formation | NC_019083_00030 | MPF_T | 17488 | 18414 | plus | 98.706 | 100 | 0 | 630 |
| mate-pair-formation | NC_017624_00009 | MPF_T | 20861 | 22657 | plus | 95.159 | 98 | 0 | 1123 |
| relaxase | NC_020552_00059 | MOBP | 8494 | 9651 | plus | 100 | 100 | 0 | 757 |
| replicon | 000221__NC_025130_00012 | IncX3 | 2383 | 3255 | minus | 100 | 100 | 0 | 1613 |
| replicon | 000483__CP010949_00006 | rep_cluster_1195 | 39067 | 39954 | minus | 82.123 | 94 | 0 | 754 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 8 of 8 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |