Plasmid NZ_LT985286.1

Sequence

Nucleotide Information

Accession NZ_LT985286.1
Description Escherichia coli strain 13948 plasmid RCS76_pI, complete sequence
Source refseq
Topology circular
Length 110066 bp
GC Content 0.51 %
Created at NCBI March 15, 2018



Biosample

Curated Collection Information
Accession 8722120

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LT985235.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_CP062913.1 See Comparison
NZ_CP062873.1 See Comparison
NZ_CP062825.1 See Comparison
NZ_CP062907.1 See Comparison
NZ_CP062862.1 See Comparison
NZ_CP062892.1 See Comparison
NZ_CP062866.1 See Comparison
NZ_CP062812.1 See Comparison
NZ_CP062877.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_OM105939.1 See Comparison
NC_025144.1 See Comparison
NC_025142.1 See Comparison
NC_024979.1 See Comparison
NZ_MF152729.1 See Comparison
NZ_MK181560.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MK181564.1 See Comparison
NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181563.1 See Comparison
NZ_MK181562.1 See Comparison
NZ_MK181558.1 See Comparison
NZ_MG948334.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_KM377238.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_LT985235.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_CP062913.1 See Comparison
NZ_CP062873.1 See Comparison
NZ_CP062825.1 See Comparison
NZ_CP062907.1 See Comparison
NZ_CP062862.1 See Comparison
NZ_CP062892.1 See Comparison
NZ_CP062866.1 See Comparison
NZ_CP062812.1 See Comparison
NZ_CP062877.1 See Comparison
NZ_MF152729.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_OM105939.1 See Comparison
NC_025144.1 See Comparison
NC_025142.1 See Comparison
NC_024979.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181563.1 See Comparison
NZ_MK181562.1 See Comparison
NZ_MK181558.1 See Comparison
NZ_MK181560.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MK181564.1 See Comparison
NZ_MG948334.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_KM377238.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison
NC_025144.1 See Comparison
NZ_LT985235.1 See Comparison
NZ_LT985286.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_CP062913.1 See Comparison
NZ_CP062873.1 See Comparison
NZ_CP062825.1 See Comparison
NZ_CP062907.1 See Comparison
NZ_CP062862.1 See Comparison
NZ_CP062892.1 See Comparison
NZ_CP062866.1 See Comparison
NZ_CP062812.1 See Comparison
NZ_CP062877.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_OM105939.1 See Comparison
NC_025142.1 See Comparison
NC_024979.1 See Comparison
NZ_KM377238.1 See Comparison
NZ_MF152729.1 See Comparison
NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181563.1 See Comparison
NZ_MK181562.1 See Comparison
NZ_MK181558.1 See Comparison
NZ_MK181560.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MK181564.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_MG948334.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_CP062913.1 See Comparison
NZ_LT985235.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_CP062873.1 See Comparison
NZ_CP062825.1 See Comparison
NZ_CP062907.1 See Comparison
NZ_CP062862.1 See Comparison
NZ_CP062892.1 See Comparison
NZ_CP062866.1 See Comparison
NZ_CP062812.1 See Comparison
NZ_CP062877.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_OM105939.1 See Comparison
NZ_MF152729.1 See Comparison
NC_025144.1 See Comparison
NC_025142.1 See Comparison
NC_024979.1 See Comparison
NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181563.1 See Comparison
NZ_MK181562.1 See Comparison
NZ_MK181558.1 See Comparison
NZ_MK181560.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MK181564.1 See Comparison
NZ_KM377238.1 See Comparison
NZ_MG948334.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_LT985235.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_CP062913.1 See Comparison
NZ_CP062873.1 See Comparison
NZ_CP062825.1 See Comparison
NZ_CP062907.1 See Comparison
NZ_CP062862.1 See Comparison
NZ_CP062892.1 See Comparison
NZ_CP062866.1 See Comparison
NZ_CP062812.1 See Comparison
NZ_CP062877.1 See Comparison
NZ_MG948334.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_OM105939.1 See Comparison
NZ_MF152729.1 See Comparison
NC_025144.1 See Comparison
NC_025142.1 See Comparison
NC_024979.1 See Comparison
NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181563.1 See Comparison
NZ_MK181562.1 See Comparison
NZ_MK181558.1 See Comparison
NZ_MK181560.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MK181564.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_KM377238.1 See Comparison
NZ_LT985235.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_CP062862.1 See Comparison
NZ_CP062892.1 See Comparison
NZ_CP062866.1 See Comparison
NZ_CP062812.1 See Comparison
NZ_CP062877.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_CP062913.1 See Comparison
NZ_CP062873.1 See Comparison
NZ_CP062825.1 See Comparison
NZ_CP062907.1 See Comparison
NZ_OM105939.1 See Comparison
NZ_MK181561.1 See Comparison
NC_025144.1 See Comparison
NC_025142.1 See Comparison
NC_024979.1 See Comparison
NZ_MF152729.1 See Comparison
NZ_MK181562.1 See Comparison
NZ_MK181558.1 See Comparison
NZ_MK181560.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MK181564.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181563.1 See Comparison
NZ_MG948334.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_KM377238.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore