Plasmid NZ_OM105939.1
Sequence
Nucleotide Information
| Accession | NZ_OM105939.1 |
|---|---|
| Description | Escherichia coli strain EHGH-133 plasmid unamed, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 109992 bp |
| GC Content | 0.51 % |
| Created at NCBI | June 6, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaCTX-M-1 | copy | ||
| amrfinderplus | aadA5 | copy | ||
| amrfinderplus | sul2 | copy | ||
| amrfinderplus | dfrA17 | copy | ||
| rgi | dfrA17 | copy | ||
| PGAG | pilL | copy | ||
| PGAG | pilM | copy | ||
| PGAG | PilN family type IVB pilus formation outer membrane protein | copy | ||
| PGAG | pilO2 | copy | ||
| PGAG | pilP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 128 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_019097_00085 | MPF_I | 20092 | 20907 | plus | 99.632 | 100 | 1.02e-177 | 549 |
| mate-pair-formation | NZ_CM001473_00069 | MPF_I | 26782 | 27126 | plus | 91.379 | 100 | 1.6799999999999995e-54 | 189 |
| mate-pair-formation | NC_022267_00069 | MPF_I | 27126 | 27773 | plus | 98.148 | 91 | 6.17e-142 | 445 |
| mate-pair-formation | NC_019097_00075 | MPF_I | 27829 | 28809 | plus | 99.694 | 100 | 0 | 656 |
| mate-pair-formation | NC_015965_00072 | MPF_I | 30104 | 30805 | plus | 99.573 | 100 | 4.56e-153 | 477 |
| mate-pair-formation | NC_023290_00086 | MPF_I | 30808 | 31332 | plus | 99.429 | 100 | 3.4400000000000003e-100 | 322 |
| mate-pair-formation | NC_019111_00038 | MPF_I | 31386 | 31787 | plus | 95.522 | 100 | 1.17e-50 | 178 |
| mate-pair-formation | NC_022267_00057 | MPF_I | 36541 | 37740 | plus | 99.25 | 100 | 0 | 769 |
| mate-pair-formation | NC_019097_00056 | MPF_I | 45910 | 48171 | plus | 98.806 | 92 | 0 | 1446 |
| replicon | CP001118 | IncI-gamma/K1 | 103372 | 104403 | minus | 100 | 100 | 0 | 1906 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |