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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP062892.1
Sequence
Nucleotide Information
Accession
NZ_CP062892.1
Description
Escherichia coli O100:H21 strain Res13-Lact-ER07-18 plasmid unnamed476, complete sequence
Source
refseq
Topology
circular
Length
109586 bp
GC Content
0.51 %
Created at NCBI
Nov. 19, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (2778652)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_015571795.1
Assembly Coverage
1
Biosample
Curated Collection Information
Accession
16304150
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Canada,Quebec
Original Query Type
name
Coordinates (Lat/Lon)
52.48/-71.83
Address
Canada,Quebec
ECOSYSTEM
Original Query
Sus scrofa domesticus,feces
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Sus scrofa (
9825
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP062894.1
NZ_CP062893.1
NZ_CP062891.1
NZ_CP062890.1
Similar Plasmids
based on Mash distance
NC_025144.1
See Comparison
NC_025142.1
See Comparison
NC_024979.1
See Comparison
NZ_MF152729.1
See Comparison
NZ_MK181561.1
See Comparison
NZ_MK181557.1
See Comparison
NZ_MK181563.1
See Comparison
NZ_MK181562.1
See Comparison
NZ_MK181558.1
See Comparison
NZ_MK181560.1
See Comparison
NZ_MK181568.1
See Comparison
NZ_MK181564.1
See Comparison
NZ_MK181561.1
See Comparison
NZ_MG948334.1
See Comparison
NZ_MH847038.1
See Comparison
NZ_CP053786.1
See Comparison
NZ_CP053788.1
See Comparison
NZ_LT985235.1
See Comparison
NZ_LT985286.1
See Comparison
NZ_LT985273.1
See Comparison
NZ_OM105938.1
See Comparison
NZ_OM105939.1
See Comparison
NZ_KM377238.1
See Comparison
NZ_CP062913.1
See Comparison
NZ_CP062873.1
See Comparison
NZ_CP062903.1
See Comparison
NZ_CP062825.1
See Comparison
NZ_CP062907.1
See Comparison
NZ_CP062862.1
See Comparison
NZ_CP062869.1
See Comparison
NZ_CP062866.1
See Comparison
NZ_CP062812.1
See Comparison
NZ_CP062877.1
See Comparison
NZ_OM142894.1
See Comparison
NC_025144.1
See Comparison
NC_025142.1
See Comparison
NC_024979.1
See Comparison
NZ_MK181557.1
See Comparison
NZ_MK181563.1
See Comparison
NZ_MK181562.1
See Comparison
NZ_MK181558.1
See Comparison
NZ_MK181560.1
See Comparison
NZ_MK181568.1
See Comparison
NZ_MK181564.1
See Comparison
NZ_MH847038.1
See Comparison
NZ_MF152729.1
See Comparison
NZ_LT985235.1
See Comparison
NZ_MG948334.1
See Comparison
NZ_CP053786.1
See Comparison
NZ_CP053788.1
See Comparison
NZ_KM377238.1
See Comparison
NZ_LT985286.1
See Comparison
NZ_LT985273.1
See Comparison
NZ_MK181558.1
See Comparison
NZ_CP062913.1
See Comparison
NZ_CP062873.1
See Comparison
NZ_CP062903.1
See Comparison
NZ_CP062825.1
See Comparison
NZ_CP062907.1
See Comparison
NZ_CP062862.1
See Comparison
NZ_CP062869.1
See Comparison
NZ_CP062892.1
See Comparison
NZ_CP062866.1
See Comparison
NZ_CP062812.1
See Comparison
NZ_CP062877.1
See Comparison
NZ_OM142894.1
See Comparison
NZ_OM105938.1
See Comparison
NZ_OM105939.1
See Comparison
NC_025144.1
See Comparison
NC_025142.1
See Comparison
NC_024979.1
See Comparison
NZ_MK181560.1
See Comparison
NZ_MK181568.1
See Comparison
NZ_MK181564.1
See Comparison
NZ_KM377238.1
See Comparison
NZ_MF152729.1
See Comparison
NZ_MK181561.1
See Comparison
NZ_MK181557.1
See Comparison
NZ_MK181563.1
See Comparison
NZ_MK181562.1
See Comparison
NZ_MG948334.1
See Comparison
NZ_MH847038.1
See Comparison
NZ_OM142894.1
See Comparison
NZ_CP053786.1
See Comparison
NZ_CP053788.1
See Comparison
NZ_LT985235.1
See Comparison
NZ_LT985286.1
See Comparison
NZ_LT985273.1
See Comparison
NZ_CP062913.1
See Comparison
NZ_CP062873.1
See Comparison
NZ_CP062903.1
See Comparison
NZ_CP062825.1
See Comparison
NZ_CP062907.1
See Comparison
NZ_CP062862.1
See Comparison
NZ_CP062869.1
See Comparison
NZ_CP062866.1
See Comparison
NZ_CP062812.1
See Comparison
NZ_CP062877.1
See Comparison
NZ_OM105938.1
See Comparison
NZ_OM105939.1
See Comparison
NZ_MF152729.1
See Comparison
NC_025144.1
See Comparison
NC_025142.1
See Comparison
NC_024979.1
See Comparison
NZ_MK181561.1
See Comparison
NZ_MK181568.1
See Comparison
NZ_MK181564.1
See Comparison
NZ_MK181557.1
See Comparison
NZ_MK181563.1
See Comparison
NZ_MK181562.1
See Comparison
NZ_MK181558.1
See Comparison
NZ_MK181560.1
See Comparison
NZ_MH847038.1
See Comparison
NZ_CP053786.1
See Comparison
NZ_MG948334.1
See Comparison
NZ_KM377238.1
See Comparison
NZ_CP053788.1
See Comparison
NZ_LT985235.1
See Comparison
NZ_LT985286.1
See Comparison
NZ_LT985273.1
See Comparison
NZ_CP062913.1
See Comparison
NZ_CP062873.1
See Comparison
NZ_CP062903.1
See Comparison
NZ_CP062825.1
See Comparison
NZ_CP062907.1
See Comparison
NZ_CP062862.1
See Comparison
NZ_CP062869.1
See Comparison
NZ_CP062866.1
See Comparison
NZ_CP062812.1
See Comparison
NZ_CP062877.1
See Comparison
NZ_MF152729.1
See Comparison
NZ_OM105938.1
See Comparison
NZ_OM105939.1
See Comparison
NC_025144.1
See Comparison
NC_025142.1
See Comparison
NC_024979.1
See Comparison
NZ_OM142894.1
See Comparison
NZ_MK181561.1
See Comparison
NZ_MK181564.1
See Comparison
NZ_MK181557.1
See Comparison
NZ_MK181563.1
See Comparison
NZ_MK181562.1
See Comparison
NZ_MK181558.1
See Comparison
NZ_MK181560.1
See Comparison
NZ_MK181568.1
See Comparison
NZ_MG948334.1
See Comparison
NZ_MH847038.1
See Comparison
NZ_CP053786.1
See Comparison
NZ_KM377238.1
See Comparison
NZ_CP053788.1
See Comparison
NZ_MF152729.1
See Comparison
NZ_LT985235.1
See Comparison
NZ_LT985286.1
See Comparison
NZ_LT985273.1
See Comparison
NZ_OM105938.1
See Comparison
NZ_OM105939.1
See Comparison
NC_025144.1
See Comparison
NC_025142.1
See Comparison
NC_024979.1
See Comparison
NZ_CP062913.1
See Comparison
NZ_CP062873.1
See Comparison
NZ_CP062903.1
See Comparison
NZ_CP062825.1
See Comparison
NZ_CP062907.1
See Comparison
NZ_CP062862.1
See Comparison
NZ_CP062869.1
See Comparison
NZ_CP062866.1
See Comparison
NZ_CP062812.1
See Comparison
NZ_CP062877.1
See Comparison
NZ_OM142894.1
See Comparison
NZ_MK181561.1
See Comparison
NZ_MK181557.1
See Comparison
NZ_MK181563.1
See Comparison
NZ_MK181562.1
See Comparison
NZ_MK181558.1
See Comparison
NZ_MK181560.1
See Comparison
NZ_MK181568.1
See Comparison
NZ_MK181564.1
See Comparison
NZ_MH847038.1
See Comparison
NZ_CP053786.1
See Comparison
NZ_KM377238.1
See Comparison
NZ_MG948334.1
See Comparison
NZ_CP053788.1
See Comparison
NZ_LT985235.1
See Comparison
NZ_LT985286.1
See Comparison
NZ_LT985273.1
See Comparison
NZ_CP062913.1
See Comparison
NZ_CP062873.1
See Comparison
NZ_CP062903.1
See Comparison
NZ_CP062825.1
See Comparison
NZ_CP062907.1
See Comparison
NZ_CP062862.1
See Comparison
NZ_CP062869.1
See Comparison
NZ_CP062866.1
See Comparison
NZ_CP062812.1
See Comparison
NZ_CP062877.1
See Comparison
NZ_OM105938.1
See Comparison
NZ_OM105939.1
See Comparison
NZ_OM142894.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore