Plasmid NZ_LT985284.1

Sequence

Nucleotide Information

Accession NZ_LT985284.1
Description Escherichia coli strain 13948 plasmid RCS76_pII, complete sequence
Source refseq
Topology circular
Length 6549 bp
GC Content 0.48 %
Created at NCBI March 15, 2018



Biosample

Curated Collection Information
Accession 8722120

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP057102.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP074023.1 See Comparison
OW849392.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP097202.1 See Comparison
OW849392.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_LT985284.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_CP103335.1 See Comparison
OW849392.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP074023.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849392.1 See Comparison
OW849254.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_CP103335.1 See Comparison
OW849287.1 See Comparison
NZ_CP074023.1 See Comparison
OW849392.1 See Comparison
OW849254.1 See Comparison
OW849281.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP041097.1 See Comparison
OW849392.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP091536.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_LT985237.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore